Variant report

Variant	rs62485234
Chromosome Location	chr7:136606575-136606576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10243944	1.00[ASN][1000 genomes]
rs10447876	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10447877	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10447878	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10447879	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10447880	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10488598	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10954567	0.84[AFR][1000 genomes]
rs11976272	0.85[ASN][1000 genomes]
rs11981061	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11982108	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532092	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12532094	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12533847	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12535371	0.82[ASN][1000 genomes]
rs12536267	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536293	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536315	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536341	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12537142	0.82[ASN][1000 genomes]
rs12539659	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12539738	0.84[AFR][1000 genomes]
rs12540313	0.84[AFR][1000 genomes]
rs12707333	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12707334	0.85[ASN][1000 genomes]
rs13224113	0.85[ASN][1000 genomes]
rs13235468	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13246516	0.88[ASN][1000 genomes]
rs1364404	0.85[ASN][1000 genomes]
rs1364405	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1364406	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1424387	0.88[ASN][1000 genomes]
rs1469179	1.00[ASN][1000 genomes]
rs17411478	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17411561	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17412549	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17412764	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17412792	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17495548	0.85[ASN][1000 genomes]
rs17495783	0.85[ASN][1000 genomes]
rs17496259	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17496363	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17496543	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17496575	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17496844	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17496997	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17497143	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17497261	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17497337	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17497363	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2278071	0.82[ASN][1000 genomes]
rs2350781	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34777519	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35458626	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35850868	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4629799	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55816133	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55828513	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55895689	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485228	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485229	0.85[ASN][1000 genomes]
rs62485236	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485237	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485238	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485239	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485240	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485241	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485242	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485243	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62485244	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485245	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485246	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485247	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485248	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62485252	0.84[AMR][1000 genomes]
rs62485254	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6947206	1.00[ASN][1000 genomes]
rs73158708	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73158738	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7457321	0.82[ASN][1000 genomes]
rs7789847	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7790583	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7799307	0.85[ASN][1000 genomes]
rs7800170	1.00[ASN][1000 genomes]
rs7810473	0.85[ASN][1000 genomes]
rs7811061	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136596400-136607200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:136601600-136609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:136603800-136609400	Weak transcription	Fetal Stomach	stomach
5	chr7:136604400-136607600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:136605200-136612200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:136605400-136610600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:136605800-136607400	Weak transcription	NHLF	lung
9	chr7:136606200-136608000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:136606400-136609800	Enhancers	Fetal Heart	heart

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