Variant report

Variant	rs62485229
Chromosome Location	chr7:136582150-136582151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10243944	0.85[ASN][1000 genomes]
rs10447876	0.83[ASN][1000 genomes]
rs10447877	0.85[ASN][1000 genomes]
rs10447878	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10447879	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10447880	0.89[AFR][1000 genomes]
rs10488598	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10954567	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11971334	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11976272	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11981061	0.85[ASN][1000 genomes]
rs11982108	0.85[ASN][1000 genomes]
rs12532092	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12532094	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12533847	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12535371	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12536267	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12536293	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12536315	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12536341	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12537142	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537962	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12539659	0.85[ASN][1000 genomes]
rs12539738	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12540313	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12707333	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707334	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13224113	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13235468	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13244595	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13246516	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1364404	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1364405	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1364406	0.89[AFR][1000 genomes]
rs1424387	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1469179	0.85[ASN][1000 genomes]
rs17411478	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17411561	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17412549	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17412764	0.85[ASN][1000 genomes]
rs17412792	0.85[ASN][1000 genomes]
rs17495182	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17495548	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17495783	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17496259	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17496363	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17496543	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17496575	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17496844	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17496997	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17497143	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17497261	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17497337	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17497363	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2278071	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350781	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34777519	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35458626	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35850868	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4629799	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs55816133	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55828513	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs55895689	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485228	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485234	0.85[ASN][1000 genomes]
rs62485236	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485237	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485238	0.85[ASN][1000 genomes]
rs62485239	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485240	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485241	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485242	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485243	0.83[ASN][1000 genomes]
rs62485244	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485245	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485246	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485247	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62485248	0.85[ASN][1000 genomes]
rs62485254	0.85[ASN][1000 genomes]
rs6947206	0.85[ASN][1000 genomes]
rs73158708	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158738	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7457321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7458912	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7789847	0.89[AFR][1000 genomes]
rs7790583	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7799307	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7800170	0.85[ASN][1000 genomes]
rs7810473	0.94[ASN][1000 genomes]
rs7811061	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136578600-136584400	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:136578800-136587200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:136580600-136585400	Enhancers	Fetal Heart	heart
5	chr7:136581200-136583400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:136581600-136584800	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links