Variant report

Variant	rs13244595
Chromosome Location	chr7:136574849-136574850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10243944	0.89[JPT][hapmap]
rs1035609	1.00[CHB][hapmap]
rs10447880	1.00[CHB][hapmap]
rs10488598	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10954567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11971334	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11976272	1.00[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11981061	0.89[JPT][hapmap]
rs11982108	0.89[JPT][hapmap]
rs12532092	0.89[JPT][hapmap]
rs12532094	0.89[JPT][hapmap]
rs12535371	1.00[CEU][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12536267	0.89[JPT][hapmap]
rs12536293	0.89[JPT][hapmap]
rs12536315	0.89[JPT][hapmap]
rs12536341	0.89[JPT][hapmap]
rs12537142	1.00[CEU][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12537962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539659	0.89[JPT][hapmap]
rs12539738	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707333	1.00[CEU][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12707334	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13224113	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13235468	0.87[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13246516	1.00[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1364404	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1364405	0.89[JPT][hapmap]
rs1364406	1.00[CHB][hapmap]
rs1424387	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1424543	1.00[CHB][hapmap]
rs1424574	1.00[CHB][hapmap]
rs1469179	0.89[JPT][hapmap]
rs17411478	1.00[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17411561	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17412549	0.89[JPT][hapmap]
rs17412764	1.00[JPT][hapmap]
rs17412792	0.88[JPT][hapmap]
rs17494846	1.00[CHB][hapmap]
rs17495182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17495548	1.00[CEU][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17495783	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17496259	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17496363	1.00[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17496543	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17496575	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17496844	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs17496997	0.89[JPT][hapmap]
rs17497143	0.89[JPT][hapmap]
rs17497261	0.89[JPT][hapmap]
rs17497337	0.88[JPT][hapmap]
rs17497363	0.88[JPT][hapmap]
rs17499892	1.00[CHB][hapmap]
rs2278071	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2350781	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs324644	1.00[CHB][hapmap]
rs34777519	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35458626	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35850868	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4341110	1.00[CHB][hapmap]
rs4629799	0.89[JPT][hapmap]
rs55816133	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62485228	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62485229	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6947206	0.89[JPT][hapmap]
rs73158708	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7357341	1.00[CHB][hapmap]
rs7457321	1.00[CEU][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7458912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7790583	0.89[JPT][hapmap]
rs7799307	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7800170	0.89[JPT][hapmap]
rs7810473	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7811061	1.00[CEU][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136565200-136575200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:136569000-136577800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:136569400-136579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:136569600-136577800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:136570200-136577800	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:136570800-136577800	Weak transcription	Fetal Stomach	stomach
8	chr7:136571200-136576800	Enhancers	Fetal Heart	heart
9	chr7:136572800-136575600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:136574200-136575800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:136574200-136576600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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