Variant report

Variant	rs17494846
Chromosome Location	chr7:136570312-136570313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1035609	1.00[CHB][hapmap]
rs10447880	1.00[CHB][hapmap]
rs10488597	1.00[YRI][hapmap]
rs10954565	1.00[YRI][hapmap]
rs10954566	1.00[YRI][hapmap]
rs10954567	1.00[CHB][hapmap]
rs12537962	1.00[CHB][hapmap]
rs12540313	1.00[CHB][hapmap]
rs12670040	0.88[MKK][hapmap];1.00[YRI][hapmap]
rs13223738	1.00[YRI][hapmap]
rs13233131	1.00[YRI][hapmap]
rs13244595	1.00[CHB][hapmap]
rs1364406	1.00[CHB][hapmap]
rs1424543	1.00[CHB][hapmap]
rs1424574	1.00[CHB][hapmap];0.80[MKK][hapmap]
rs17409631	1.00[YRI][hapmap]
rs17409769	0.88[MKK][hapmap];1.00[YRI][hapmap]
rs17495182	1.00[CHB][hapmap]
rs17499892	1.00[CHB][hapmap]
rs324644	1.00[CHB][hapmap]
rs4341110	1.00[CHB][hapmap]
rs7357341	1.00[CHB][hapmap]
rs7458912	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17494846	PTN	cis	parietal	SCAN
rs17494846	CREB3L2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136565200-136575200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:136568200-136574200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:136569000-136577800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:136569400-136579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:136569600-136570600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:136569600-136577800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:136569800-136570800	Enhancers	Fetal Heart	heart
9	chr7:136570200-136577800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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