Variant report

Variant	rs62486595
Chromosome Location	chr7:140732506-140732507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1089265	1.00[ASN][1000 genomes]
rs1091557	1.00[ASN][1000 genomes]
rs246744	0.81[AFR][1000 genomes]
rs246745	1.00[ASN][1000 genomes]
rs246746	1.00[ASN][1000 genomes]
rs38725	0.80[AFR][1000 genomes]
rs38741	1.00[ASN][1000 genomes]
rs38743	1.00[ASN][1000 genomes]
rs62486599	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7787917	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7791022	1.00[ASN][1000 genomes]
rs801118	1.00[ASN][1000 genomes]
rs801119	1.00[ASN][1000 genomes]
rs801122	1.00[ASN][1000 genomes]
rs801124	1.00[ASN][1000 genomes]
rs801126	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140732000-140732800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:140732200-140732600	Enhancers	HepG2	liver
3	chr7:140732400-140732600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:140732400-140732600	Flanking Active TSS	K562	blood
5	chr7:140732400-140732800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:140732400-140732800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:140732400-140732800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr7:140732400-140732800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:140732400-140732800	Active TSS	Placenta	Placenta
10	chr7:140732400-140733200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:140732400-140733200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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