Variant report

Variant	rs801124
Chromosome Location	chr7:140717936-140717937
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140623056..140626770-chr7:140716798..140719884,3	K562	blood:
2	chr7:140713180..140715870-chr7:140717808..140719849,2	K562	blood:
3	chr7:140714625..140716558-chr7:140717723..140719497,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157764	Chromatin interaction
ENSG00000090263	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10279193	0.83[EUR][1000 genomes]
rs1089265	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1091557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534351	0.83[EUR][1000 genomes]
rs12534354	0.83[EUR][1000 genomes]
rs1860481	0.85[EUR][1000 genomes]
rs2079829	0.85[EUR][1000 genomes]
rs246738	0.85[EUR][1000 genomes]
rs246740	0.85[EUR][1000 genomes]
rs246741	0.85[EUR][1000 genomes]
rs246742	0.85[EUR][1000 genomes]
rs246743	0.92[EUR][1000 genomes]
rs246744	0.94[EUR][1000 genomes]
rs246745	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs246746	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3844322	0.83[EUR][1000 genomes]
rs38716	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38721	0.81[EUR][1000 genomes]
rs38724	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38725	0.98[EUR][1000 genomes]
rs38727	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38728	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38729	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs38737	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs38741	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38743	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62486595	1.00[ASN][1000 genomes]
rs62486599	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949856	0.85[EUR][1000 genomes]
rs6950813	0.83[EUR][1000 genomes]
rs7778860	0.83[EUR][1000 genomes]
rs7782666	0.85[EUR][1000 genomes]
rs7787917	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791022	1.00[ASN][1000 genomes]
rs801118	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801119	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801122	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9640306	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs801124	TMEM178B	cis	Esophagus Mucosa	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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