Variant report

Variant	rs62506599
Chromosome Location	chr8:66888699-66888700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17307227	0.87[AMR][1000 genomes]
rs58101985	0.85[ASN][1000 genomes]
rs58902647	0.89[AMR][1000 genomes]
rs62506579	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62506580	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62506584	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62506635	0.91[AMR][1000 genomes]
rs62506644	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7011399	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72650514	0.85[ASN][1000 genomes]
rs72650520	0.94[ASN][1000 genomes]
rs7846530	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66873800-66890600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr8:66878800-66893600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:66884800-66888800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr8:66885400-66890000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:66886600-66892600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:66886600-66893600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:66887200-66893600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:66887400-66893400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr8:66887400-66893600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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