Variant report

Variant	rs62506584
Chromosome Location	chr8:66863602-66863603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66861177..66863828-chr8:66940545..66942693,2	MCF-7	breast:
2	chr8:66862815..66865699-chr8:66933396..66936116,2	MCF-7	breast:
3	chr8:66752809..66755936-chr8:66862099..66866761,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147570	Chromatin interaction
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58101985	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58175788	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62506579	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62506580	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62506599	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72650514	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72650520	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66859600-66864600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:66859600-66865200	Flanking Active TSS	Dnd41	blood
3	chr8:66859800-66863800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:66860200-66865200	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:66860800-66864200	Enhancers	Spleen	Spleen
6	chr8:66861200-66864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:66861400-66864400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:66861600-66863800	Enhancers	HMEC	breast
9	chr8:66861600-66864600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:66862400-66865000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr8:66862600-66864600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr8:66862600-66865000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr8:66862600-66865200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr8:66862800-66864400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:66862800-66864600	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr8:66863000-66863800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr8:66863000-66864400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:66863000-66864600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:66863000-66864600	Flanking Active TSS	Fetal Thymus	thymus
20	chr8:66863000-66865200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:66863200-66863800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:66863200-66864400	Enhancers	K562	blood
23	chr8:66863200-66864800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:66863200-66865000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr8:66863200-66865000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr8:66863200-66865200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr8:66863200-66866000	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr8:66863200-66871600	Weak transcription	Esophagus	oesophagus
29	chr8:66863400-66863800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr8:66863400-66863800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr8:66863400-66863800	Enhancers	NHEK	skin
32	chr8:66863400-66864200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr8:66863400-66864200	Enhancers	Placenta Amnion	Placenta Amnion
34	chr8:66863400-66864600	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr8:66863400-66864600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr8:66863400-66864600	Enhancers	Placenta	Placenta
37	chr8:66863400-66864800	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr8:66863400-66864800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr8:66863400-66865000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr8:66863600-66863800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:66863600-66863800	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr8:66863600-66864000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr8:66863600-66864200	Enhancers	Brain Hippocampus Middle	brain
44	chr8:66863600-66864200	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr8:66863600-66864200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr8:66863600-66864200	Active TSS	Rectal Smooth Muscle	rectum
47	chr8:66863600-66864200	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr8:66863600-66864400	Active TSS	Thymus	Thymus
49	chr8:66863600-66864800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

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