Variant report

Variant	rs58175788
Chromosome Location	chr8:66770103-66770104
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58101985	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59198392	0.81[AMR][1000 genomes]
rs62506579	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62506580	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62506584	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62507653	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6472228	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66537647	0.81[AMR][1000 genomes]
rs6984402	0.81[AMR][1000 genomes]
rs72650509	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72650514	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72650520	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72666552	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv611456	chr8:66759626-66772558	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58175788	MTFR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66766400-66771000	Weak transcription	A549	lung
2	chr8:66768600-66770600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr8:66769600-66770200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr8:66769600-66770400	Enhancers	Primary T cells from cord blood	blood
5	chr8:66769600-66770400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr8:66769600-66770400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:66769600-66770400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr8:66769800-66770200	Enhancers	GM12878-XiMat	blood
9	chr8:66769800-66770600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:66769800-66771200	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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