Variant report

Variant	rs72666552
Chromosome Location	chr8:66698050-66698051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66695741..66698678-chr8:66932629..66934768,2	MCF-7	breast:
2	chr8:66691641..66695119-chr8:66697675..66699405,3	K562	blood:
3	chr8:66697287..66699597-chr8:66938827..66941499,2	MCF-7	breast:
4	chr8:66697439..66699329-chr8:66700344..66702673,3	K562	blood:
5	chr8:66673672..66679496-chr8:66697045..66699845,4	MCF-7	breast:
6	chr8:66695473..66703733-chr8:66751774..66756006,10	K562	blood:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction
ENSG00000147570	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10504392	0.86[ASN][1000 genomes]
rs1316700	0.90[ASN][1000 genomes]
rs58101985	0.81[AMR][1000 genomes]
rs58175788	0.83[AMR][1000 genomes]
rs59198392	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62507653	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6472221	0.90[ASN][1000 genomes]
rs6472224	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6472228	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66537647	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66609388	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67813477	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6984402	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72650509	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7839014	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66678600-66701400	Weak transcription	Ovary	ovary
2	chr8:66688200-66706200	Weak transcription	Brain Anterior Caudate	brain
3	chr8:66689200-66707200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:66690600-66702400	Weak transcription	Esophagus	oesophagus
5	chr8:66691000-66702200	Weak transcription	Spleen	Spleen
6	chr8:66691000-66702400	Weak transcription	Colonic Mucosa	Colon
7	chr8:66691200-66699000	Weak transcription	Fetal Intestine Small	intestine
8	chr8:66691200-66702000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:66691600-66699400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:66691600-66699400	Weak transcription	Fetal Kidney	kidney
11	chr8:66692200-66699000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:66693000-66708600	Weak transcription	NHDF-Ad	bronchial
13	chr8:66693600-66699000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:66693600-66699000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:66693600-66701200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:66693600-66701200	Weak transcription	Gastric	stomach
17	chr8:66693600-66702200	Weak transcription	Pancreas	Pancrea
18	chr8:66693600-66703800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:66693600-66704800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr8:66693600-66707400	Weak transcription	Placenta	Placenta
21	chr8:66693800-66698400	Weak transcription	HSMM	muscle
22	chr8:66693800-66698800	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:66693800-66699000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:66693800-66699000	Weak transcription	Liver	Liver
25	chr8:66693800-66699000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:66693800-66699000	Weak transcription	Hela-S3	cervix
27	chr8:66693800-66701000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:66693800-66701200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:66693800-66701200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:66693800-66701200	Weak transcription	Fetal Stomach	stomach
31	chr8:66693800-66701400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr8:66693800-66701400	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:66693800-66704800	Weak transcription	HSMMtube	muscle
34	chr8:66693800-66707400	Weak transcription	Aorta	Aorta
35	chr8:66694000-66698800	Weak transcription	K562	blood
36	chr8:66694000-66699000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:66694000-66699000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr8:66694000-66701000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr8:66694000-66701000	Weak transcription	Colon Smooth Muscle	Colon
40	chr8:66694000-66701200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr8:66694200-66698800	Weak transcription	HMEC	breast
42	chr8:66694200-66699000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr8:66694200-66699000	Weak transcription	Fetal Intestine Large	intestine
44	chr8:66694200-66699600	Weak transcription	Fetal Lung	lung
45	chr8:66694200-66701000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr8:66694200-66701200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr8:66694200-66701400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr8:66694200-66702200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr8:66694200-66702200	Weak transcription	HepG2	liver
50	chr8:66694400-66698800	Weak transcription	Fetal Muscle Trunk	muscle

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