Variant report

Variant	rs62506646
Chromosome Location	chr8:66911911-66911912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66753202..66755807-chr8:66909407..66912061,2	K562	blood:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000272192	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16932426	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932433	0.95[ASN][1000 genomes]
rs17307227	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357571	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380923	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495411	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4549750	0.91[ASN][1000 genomes]
rs58902647	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62506635	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62506642	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62506643	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62506644	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62507392	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985796	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006334	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011399	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7016694	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823449	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836993	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846530	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66909800-66915400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr8:66909800-66915400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:66910000-66912000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr8:66910000-66912200	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr8:66910000-66914000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr8:66910000-66915800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:66910000-66916200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr8:66910200-66912200	Enhancers	Fetal Thymus	thymus
9	chr8:66910200-66914200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr8:66910200-66914600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:66910200-66915200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:66910200-66915600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr8:66910200-66917800	Enhancers	Primary T cells from cord blood	blood
14	chr8:66910400-66913800	Enhancers	Primary B cells from peripheral blood	blood
15	chr8:66910600-66912800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr8:66911400-66912000	Enhancers	Fetal Intestine Large	intestine
17	chr8:66911400-66912000	Enhancers	Fetal Intestine Small	intestine
18	chr8:66911600-66912800	Enhancers	Hela-S3	cervix
19	chr8:66911800-66912000	Enhancers	Primary B cells from cord blood	blood
20	chr8:66911800-66912800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr8:66911800-66912800	Weak transcription	Thymus	Thymus
22	chr8:66911800-66912800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr8:66911800-66917200	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links