Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10958572	0.93[EUR][1000 genomes]
rs12056378	0.82[EUR][1000 genomes]
rs12056477	0.82[EUR][1000 genomes]
rs12056699	0.82[EUR][1000 genomes]
rs16888361	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16888365	0.94[EUR][1000 genomes]
rs16888382	0.91[EUR][1000 genomes]
rs16888441	0.82[EUR][1000 genomes]
rs34137953	0.88[EUR][1000 genomes]
rs4090533	0.85[EUR][1000 genomes]
rs4090534	0.85[EUR][1000 genomes]
rs55831608	0.82[EUR][1000 genomes]
rs56055654	0.85[EUR][1000 genomes]
rs57264762	0.85[EUR][1000 genomes]
rs57283040	0.82[EUR][1000 genomes]
rs59017358	0.91[EUR][1000 genomes]
rs59564535	0.91[EUR][1000 genomes]
rs60316762	0.82[EUR][1000 genomes]
rs61020637	0.85[EUR][1000 genomes]
rs61267348	0.82[EUR][1000 genomes]
rs62512635	0.85[ASN][1000 genomes]
rs62512640	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62512641	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62512645	0.89[EUR][1000 genomes]
rs62513107	0.83[EUR][1000 genomes]
rs62513108	0.82[EUR][1000 genomes]
rs62513109	0.85[EUR][1000 genomes]
rs62513110	0.85[EUR][1000 genomes]
rs62513111	0.85[EUR][1000 genomes]
rs62513112	0.85[EUR][1000 genomes]
rs62513117	0.85[EUR][1000 genomes]
rs62513119	0.81[EUR][1000 genomes]
rs62513120	0.82[EUR][1000 genomes]
rs62513780	0.82[EUR][1000 genomes]
rs62513781	0.82[EUR][1000 genomes]
rs6474199	0.85[EUR][1000 genomes]
rs7003749	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv508505	chr8:39730094-39791331	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
2	chr8:39782800-39790000	Weak transcription	Fetal Lung	lung
3	chr8:39783000-39792000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:39783200-39790800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:39785600-39792000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:39785800-39790600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:39785800-39791000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:39785800-39791000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:39785800-39792000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:39786000-39790400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:39786000-39790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:39786000-39790800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:39786000-39791000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:39788200-39793800	Weak transcription	K562	blood

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