Variant report

Variant	rs62512641
Chromosome Location	chr8:39792457-39792458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr8:39792408-39792833	H1-hESC	embryonic stem cell:	n/a	chr8:39792814-39792826

Variant related genes	Relation type
IDO2	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10958572	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12056378	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12056477	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12056699	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16888361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888365	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16888382	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16888441	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34137953	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4090533	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4090534	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55831608	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56055654	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57264762	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57283040	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59017358	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59564535	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60316762	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61020637	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61267348	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62512637	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62512640	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62512645	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513107	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62513108	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62513109	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513110	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513111	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513112	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62513117	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62513119	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62513120	0.88[EUR][1000 genomes]
rs62513780	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62513781	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6474199	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7003749	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
2	chr8:39785600-39805800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39788200-39793800	Weak transcription	K562	blood
4	chr8:39791000-39792600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:39791000-39792800	Enhancers	Fetal Lung	lung
6	chr8:39791000-39793200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:39792000-39792600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr8:39792000-39792600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr8:39792000-39793400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:39792200-39792600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr8:39792200-39792800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr8:39792400-39792600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr8:39792400-39792800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr8:39792400-39792800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr8:39792400-39797400	Weak transcription	H1 Cell Line	embryonic stem cell

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