Variant report

Variant	rs62513533
Chromosome Location	chr8:59105841-59105842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59102071..59103829-chr8:59104945..59107141,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11994480	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57937608	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62512260	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62513532	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62513539	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62513540	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62513541	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62514784	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59103800-59110400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59104400-59108400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:59104400-59116200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59104800-59106600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:59104800-59108000	Weak transcription	NHDF-Ad	bronchial
6	chr8:59105000-59108200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:59105000-59109800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:59105000-59110000	Weak transcription	Fetal Stomach	stomach
9	chr8:59105200-59108000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:59105200-59108000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:59105200-59108200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:59105200-59114800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:59105400-59108200	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:59105600-59106400	Enhancers	HMEC	breast
15	chr8:59105600-59108400	Weak transcription	HSMM	muscle
16	chr8:59105800-59106600	Enhancers	Placenta	Placenta
17	chr8:59105800-59106800	Enhancers	NHEK	skin
18	chr8:59105800-59108200	Weak transcription	NH-A	brain
19	chr8:59105800-59108400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:59105800-59108400	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links