Variant report

Variant	rs62513540
Chromosome Location	chr8:59112252-59112253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11994480	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57937608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62512260	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513532	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62513533	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62513534	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62513536	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62513537	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62513539	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62513541	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514784	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995967	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59104400-59116200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:59105200-59114800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:59110000-59115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:59110000-59124600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:59110800-59115000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:59110800-59121400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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