Variant report

Variant	rs6995967
Chromosome Location	chr8:59146682-59146683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59145400..59147807-chr8:59266194..59268454,2	MCF-7	breast:
2	chr8:59146492..59148058-chr8:59152257..59153842,2	MCF-7	breast:
3	chr8:58906362..58910518-chr8:59145004..59149868,5	MCF-7	breast:
4	chr8:59106915..59110868-chr8:59145602..59149155,4	MCF-7	breast:
5	chr8:58979230..58980915-chr8:59145278..59146797,2	MCF-7	breast:
6	chr8:58989456..58993031-chr8:59145472..59149096,3	MCF-7	breast:
7	chr8:59144776..59146918-chr8:59147975..59150397,2	K562	blood:
8	chr8:59060739..59063586-chr8:59145655..59147494,2	MCF-7	breast:
9	chr8:59049598..59053395-chr8:59145380..59148312,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11994480	0.81[EUR][1000 genomes]
rs57937608	0.81[EUR][1000 genomes]
rs62512260	0.91[AMR][1000 genomes]
rs62513539	0.81[EUR][1000 genomes]
rs62513540	0.81[EUR][1000 genomes]
rs62513541	0.81[EUR][1000 genomes]
rs62514784	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526320	chr8:59138364-59148256	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59140200-59149600	Weak transcription	Fetal Lung	lung
2	chr8:59144200-59147200	Weak transcription	GM12878-XiMat	blood
3	chr8:59144200-59150400	Weak transcription	Left Ventricle	heart
4	chr8:59145200-59147000	Enhancers	NHDF-Ad	bronchial
5	chr8:59145200-59148600	Enhancers	Fetal Muscle Leg	muscle
6	chr8:59145800-59146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:59146200-59147400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:59146200-59149200	Enhancers	Placenta	Placenta
9	chr8:59146400-59146800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr8:59146400-59147000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:59146400-59147400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:59146400-59147400	Enhancers	NH-A	brain
13	chr8:59146400-59148400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:59146600-59147400	Enhancers	Fetal Stomach	stomach
15	chr8:59146600-59147600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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