Variant report

Variant	rs62514883
Chromosome Location	chr8:107629265-107629266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11996910	0.86[ASN][1000 genomes]
rs28921379	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28921401	0.86[ASN][1000 genomes]
rs56163038	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59850440	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60954959	0.85[ASN][1000 genomes]
rs62514961	0.86[ASN][1000 genomes]
rs62514962	0.86[ASN][1000 genomes]
rs62515053	1.00[AMR][1000 genomes]
rs62517940	0.86[ASN][1000 genomes]
rs73699591	0.85[ASN][1000 genomes]
rs73699593	0.85[ASN][1000 genomes]
rs73699594	0.85[ASN][1000 genomes]
rs73699596	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73699600	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107620000-107629800	Weak transcription	Primary T cells from cord blood	blood
4	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
5	chr8:107621200-107629800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:107621400-107633400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:107621600-107629600	Weak transcription	HepG2	liver
8	chr8:107623800-107630000	Weak transcription	HMEC	breast
9	chr8:107624000-107630200	Weak transcription	Gastric	stomach
10	chr8:107625600-107629800	Weak transcription	GM12878-XiMat	blood
11	chr8:107628200-107629400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:107629000-107630200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:107629200-107629800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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