Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107635047..107638167-chr8:107668813..107672580,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11985106	0.83[AMR][1000 genomes]
rs11996910	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28921379	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28921401	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28924705	1.00[AMR][1000 genomes]
rs28924708	1.00[AMR][1000 genomes]
rs59850440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60954959	0.85[ASN][1000 genomes]
rs62514883	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514961	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62514962	0.86[ASN][1000 genomes]
rs62514966	1.00[AMR][1000 genomes]
rs62514967	1.00[AMR][1000 genomes]
rs62514989	0.83[AMR][1000 genomes]
rs62514990	0.83[AMR][1000 genomes]
rs62514991	0.83[AMR][1000 genomes]
rs62514992	0.83[AMR][1000 genomes]
rs62514993	0.83[AMR][1000 genomes]
rs62514994	0.83[AMR][1000 genomes]
rs62514995	0.83[AMR][1000 genomes]
rs62514998	1.00[AMR][1000 genomes]
rs62515019	0.83[AMR][1000 genomes]
rs62515020	0.83[AMR][1000 genomes]
rs62515026	1.00[AMR][1000 genomes]
rs62515027	1.00[AMR][1000 genomes]
rs62515028	1.00[AMR][1000 genomes]
rs62517940	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73699591	0.85[ASN][1000 genomes]
rs73699593	0.85[ASN][1000 genomes]
rs73699594	0.85[ASN][1000 genomes]
rs73699596	0.85[ASN][1000 genomes]
rs73699600	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7818768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
4	chr8:107630600-107643400	Weak transcription	Gastric	stomach
5	chr8:107630600-107657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:107636800-107641000	Weak transcription	Fetal Intestine Small	intestine
7	chr8:107636800-107657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:107637000-107641200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:107637200-107648400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:107637400-107641200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107637400-107642600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:107638000-107639800	Weak transcription	HepG2	liver
13	chr8:107638000-107640800	Weak transcription	Liver	Liver
14	chr8:107638000-107641000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:107638000-107642200	Weak transcription	Stomach Mucosa	stomach

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