Variant report

Variant	rs62514994
Chromosome Location	chr8:107808159-107808160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11985106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990726	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11991842	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11993732	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11996910	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13260161	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16875182	0.81[ASN][1000 genomes]
rs2170909	0.85[ASN][1000 genomes]
rs28921379	0.81[ASN][1000 genomes]
rs28921401	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28924697	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28924705	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28924708	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28924709	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56163038	0.83[AMR][1000 genomes]
rs57222442	0.85[ASN][1000 genomes]
rs62514961	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62514962	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62514964	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514966	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62514967	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514968	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514985	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514986	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514987	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514988	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514989	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514998	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62515019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62515020	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62515026	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62515027	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62515028	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62515052	0.85[ASN][1000 genomes]
rs62515053	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62517940	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73699600	0.83[AMR][1000 genomes]
rs7818768	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107806200-107808400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:107806200-107809400	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:107806600-107808400	Enhancers	HUVEC	blood vessel
4	chr8:107806600-107809600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:107806800-107808400	Enhancers	Primary T cells from cord blood	blood
6	chr8:107807200-107808400	Enhancers	Fetal Thymus	thymus
7	chr8:107807600-107808400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:107807600-107812800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:107807600-107814400	Weak transcription	Aorta	Aorta
10	chr8:107807800-107809000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:107807800-107809200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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