Variant report

Variant	rs62514968
Chromosome Location	chr8:107755710-107755711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11985106	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11990726	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991842	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993732	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996910	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13260161	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28921379	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28921401	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28924697	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28924705	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28924708	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28924709	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59850440	0.87[AMR][1000 genomes]
rs62514961	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514962	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514964	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514966	1.00[EUR][1000 genomes]
rs62514967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514985	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514986	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514987	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514988	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514989	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514990	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514991	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514992	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514993	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514994	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514995	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514998	0.85[EUR][1000 genomes]
rs62515019	0.81[ASN][1000 genomes]
rs62515020	0.81[ASN][1000 genomes]
rs62517940	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107762400	Weak transcription	Lung	lung
2	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
3	chr8:107719600-107775200	Weak transcription	Gastric	stomach
4	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
5	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:107739000-107775200	Weak transcription	A549	lung
8	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
9	chr8:107740000-107756200	Weak transcription	Psoas Muscle	Psoas
10	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:107740000-107775200	Weak transcription	Ovary	ovary
12	chr8:107740200-107767400	Weak transcription	K562	blood
13	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
14	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
15	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
16	chr8:107747000-107756000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:107747000-107757800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
19	chr8:107747600-107757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:107748600-107760400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr8:107749000-107761200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr8:107749200-107765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:107749400-107756000	Weak transcription	NHDF-Ad	bronchial
24	chr8:107749400-107756200	Weak transcription	NH-A	brain
25	chr8:107749400-107756200	Weak transcription	Osteobl	bone
26	chr8:107749400-107775200	Weak transcription	HMEC	breast
27	chr8:107749600-107756600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr8:107749800-107760800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr8:107750600-107758600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:107751000-107764800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:107751400-107756400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:107751400-107756600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:107751400-107757000	Strong transcription	Duodenum Mucosa	Duodenum
34	chr8:107751400-107757200	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr8:107751400-107757400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr8:107751400-107758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:107751600-107756600	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr8:107751600-107756600	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr8:107751600-107756600	Strong transcription	Liver	Liver
40	chr8:107751600-107756600	Strong transcription	Fetal Lung	lung
41	chr8:107751600-107757000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:107751600-107757000	Strong transcription	Placenta	Placenta
43	chr8:107751600-107757400	Strong transcription	Adipose Nuclei	Adipose
44	chr8:107751600-107757800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr8:107751600-107757800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:107751600-107761000	Strong transcription	Primary B cells from cord blood	blood
47	chr8:107751600-107763000	Weak transcription	HSMMtube	muscle
48	chr8:107751800-107756600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:107751800-107757000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:107751800-107757200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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