Variant report

Variant	rs62514967
Chromosome Location	chr8:107746458-107746459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11985106	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11990726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991842	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993732	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996910	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13260161	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28921379	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28921401	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28924697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28924705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28924708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28924709	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56163038	1.00[AMR][1000 genomes]
rs62514961	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514962	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514964	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62514968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514985	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514986	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514987	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514988	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514989	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62514990	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514991	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514992	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514993	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514994	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514995	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62514998	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62515019	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62515020	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62515026	1.00[AMR][1000 genomes]
rs62515027	1.00[AMR][1000 genomes]
rs62515028	1.00[AMR][1000 genomes]
rs62517940	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73699600	1.00[AMR][1000 genomes]
rs7818768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719600-107762400	Weak transcription	Lung	lung
3	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
4	chr8:107719600-107775200	Weak transcription	Gastric	stomach
5	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
6	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:107724800-107751400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:107731600-107748400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:107733000-107751200	Weak transcription	HepG2	liver
10	chr8:107734200-107750600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:107736200-107751600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:107737200-107748600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr8:107737200-107750000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:107738600-107751600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
18	chr8:107738800-107747800	Weak transcription	GM12878-XiMat	blood
19	chr8:107738800-107751400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:107739000-107752600	Weak transcription	Fetal Intestine Large	intestine
22	chr8:107739000-107753000	Weak transcription	Colon Smooth Muscle	Colon
23	chr8:107739000-107754200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:107739000-107775200	Weak transcription	A549	lung
26	chr8:107739200-107748400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:107739200-107751600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:107739200-107752000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:107739200-107752600	Weak transcription	Fetal Kidney	kidney
30	chr8:107739200-107752600	Weak transcription	Fetal Thymus	thymus
31	chr8:107739200-107753200	Weak transcription	NHLF	lung
32	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
33	chr8:107739400-107746600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:107739600-107751600	Weak transcription	Liver	Liver
35	chr8:107739800-107748200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:107740000-107747400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr8:107740000-107748200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:107740000-107748200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr8:107740000-107751600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr8:107740000-107751600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr8:107740000-107751600	Weak transcription	Left Ventricle	heart
42	chr8:107740000-107756200	Weak transcription	Psoas Muscle	Psoas
43	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:107740000-107775200	Weak transcription	Ovary	ovary
45	chr8:107740200-107746600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr8:107740200-107747000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr8:107740200-107749800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr8:107740200-107752400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr8:107740200-107754400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr8:107740200-107755400	Weak transcription	Thymus	Thymus

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