Variant report

Variant	rs62518333
Chromosome Location	chr8:107936766-107936767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107936207..107938008-chr8:107942001..107944516,2	MCF-7	breast:
2	chr8:107927132..107929876-chr8:107934967..107937807,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16875340	0.93[EUR][1000 genomes]
rs16875341	0.93[EUR][1000 genomes]
rs55827610	0.87[EUR][1000 genomes]
rs62515056	1.00[AMR][1000 genomes]
rs62515057	1.00[AMR][1000 genomes]
rs62515165	1.00[EUR][1000 genomes]
rs62515166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62515167	1.00[EUR][1000 genomes]
rs62515168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62515170	1.00[AMR][1000 genomes]
rs62518260	1.00[AMR][1000 genomes]
rs62518276	1.00[AMR][1000 genomes]
rs62518279	1.00[AMR][1000 genomes]
rs62518280	1.00[AMR][1000 genomes]
rs62518289	1.00[AMR][1000 genomes]
rs62518293	1.00[AMR][1000 genomes]
rs62518296	1.00[AMR][1000 genomes]
rs62518329	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6651200	1.00[AMR][1000 genomes]
rs7009286	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1028916	chr8:107925350-107974654	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107928800-107939000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:107929000-107942200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:107930000-107936800	Weak transcription	Aorta	Aorta
4	chr8:107933600-107939600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:107934400-107938000	Weak transcription	Psoas Muscle	Psoas
6	chr8:107934400-107939800	Enhancers	NHDF-Ad	bronchial
7	chr8:107935600-107937200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:107935600-107938800	Enhancers	HSMMtube	muscle
9	chr8:107936000-107936800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:107936000-107937200	Enhancers	HSMM	muscle
11	chr8:107936000-107938200	Enhancers	NHLF	lung
12	chr8:107936200-107936800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:107936200-107937800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr8:107936200-107938200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:107936400-107937200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:107936400-107937600	Enhancers	Fetal Muscle Leg	muscle
17	chr8:107936400-107937800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:107936600-107936800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:107936600-107937000	Flanking Active TSS	Osteobl	bone
20	chr8:107936600-107937800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:107936600-107938200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:107936600-107938200	Enhancers	NH-A	brain

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