Variant report

Variant	rs62518433
Chromosome Location	chr8:124570147-124570148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124570137..124572022-chr8:124691022..124692665,2	MCF-7	breast:
2	chr8:124558984..124560715-chr8:124570075..124571667,2	MCF-7	breast:
3	chr8:124562347..124564548-chr8:124566856..124570361,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs140613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17254069	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17254421	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17255071	0.92[AMR][1000 genomes]
rs17255197	0.92[AMR][1000 genomes]
rs17337621	0.84[AMR][1000 genomes]
rs17338552	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17338860	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17339357	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17340040	0.92[AMR][1000 genomes]
rs62518434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518561	0.92[AMR][1000 genomes]
rs62518563	0.92[AMR][1000 genomes]
rs62518564	0.92[AMR][1000 genomes]
rs62520862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62520863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62520870	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62520871	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62520874	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62520906	0.90[EUR][1000 genomes]
rs62520908	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62520911	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62520913	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62520914	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62520917	0.92[AMR][1000 genomes]
rs62520918	0.92[AMR][1000 genomes]
rs62520919	0.92[AMR][1000 genomes]
rs62520920	0.92[AMR][1000 genomes]
rs62520921	0.92[AMR][1000 genomes]
rs62520923	0.92[AMR][1000 genomes]
rs62520926	0.92[AMR][1000 genomes]
rs62521284	0.84[AMR][1000 genomes]
rs62521286	0.81[EUR][1000 genomes]
rs62521287	0.81[EUR][1000 genomes]
rs62521289	0.81[EUR][1000 genomes]
rs62521292	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7004159	0.95[EUR][1000 genomes]
rs7812380	0.92[AFR][1000 genomes]
rs7827535	0.92[AMR][1000 genomes]
rs7827608	0.85[AMR][1000 genomes]
rs7832861	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124558800-124571400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:124569600-124571000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:124569600-124571000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:124569800-124571000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:124570000-124570400	Flanking Active TSS	NHEK	skin
6	chr8:124570000-124570800	Enhancers	HMEC	breast

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