Variant report

Variant	rs62518439
Chromosome Location	chr8:124575164-124575165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124558876..124561148-chr8:124573181..124575247,2	MCF-7	breast:
2	chr8:124574966..124577834-chr8:124674515..124676204,2	MCF-7	breast:
3	chr8:124551947..124555089-chr8:124574852..124578718,4	MCF-7	breast:
4	chr8:124574833..124579835-chr8:124581420..124586695,7	MCF-7	breast:
5	chr8:124573924..124575811-chr8:124615788..124618041,2	MCF-7	breast:
6	chr8:124548751..124555755-chr8:124572914..124580106,12	MCF-7	breast:
7	chr8:124572458..124577349-chr8:124702422..124707183,6	MCF-7	breast:
8	chr8:124574004..124576603-chr8:124675208..124677787,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000156804	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs140613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17254069	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17254421	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17255071	0.92[AMR][1000 genomes]
rs17255197	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17337621	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17338552	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17338860	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17339357	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17340040	0.92[AMR][1000 genomes]
rs62518433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518561	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62518563	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62518564	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62520862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62520863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62520870	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62520871	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62520874	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62520906	0.90[EUR][1000 genomes]
rs62520908	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62520911	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62520913	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62520914	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62520917	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62520918	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62520919	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62520920	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62520921	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62520923	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62520926	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62520927	1.00[AFR][1000 genomes]
rs62521279	1.00[AFR][1000 genomes]
rs62521284	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62521286	0.81[EUR][1000 genomes]
rs62521287	0.81[EUR][1000 genomes]
rs62521289	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62521291	1.00[AFR][1000 genomes]
rs62521292	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62523171	1.00[AFR][1000 genomes]
rs6999582	1.00[AFR][1000 genomes]
rs7004159	0.95[EUR][1000 genomes]
rs7827535	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7827608	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7832861	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124571000-124575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:124572800-124575600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:124575000-124575200	Weak transcription	HMEC	breast
4	chr8:124575000-124575400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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