Variant report

Variant	rs62520688
Chromosome Location	chr8:111930261-111930262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111929502..111932269-chr8:111933954..111936192,2	MCF-7	breast:

Extended variants
information (count: 189 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:183)

rs_ID	r²[population]
rs10097945	1.00[ASN][1000 genomes]
rs10955544	0.84[EUR][1000 genomes]
rs11998106	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387411	0.88[EUR][1000 genomes]
rs1602039	0.88[EUR][1000 genomes]
rs1602040	0.88[EUR][1000 genomes]
rs1602041	0.88[EUR][1000 genomes]
rs1602043	0.88[EUR][1000 genomes]
rs1602044	0.88[EUR][1000 genomes]
rs1602045	0.88[EUR][1000 genomes]
rs16881088	0.88[EUR][1000 genomes]
rs16881101	0.88[EUR][1000 genomes]
rs16881112	0.88[EUR][1000 genomes]
rs16881121	0.88[EUR][1000 genomes]
rs16881123	0.88[EUR][1000 genomes]
rs16881124	0.88[EUR][1000 genomes]
rs16881145	0.88[EUR][1000 genomes]
rs16881150	0.88[EUR][1000 genomes]
rs2130186	0.88[EUR][1000 genomes]
rs2171708	0.88[EUR][1000 genomes]
rs2220482	0.88[EUR][1000 genomes]
rs2351324	0.88[EUR][1000 genomes]
rs2351326	0.88[EUR][1000 genomes]
rs2882627	0.88[EUR][1000 genomes]
rs4634614	0.88[EUR][1000 genomes]
rs56966024	0.88[EUR][1000 genomes]
rs56992800	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57005858	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57496484	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58499839	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58685030	0.88[EUR][1000 genomes]
rs58874649	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59243778	0.88[EUR][1000 genomes]
rs59714343	1.00[ASN][1000 genomes]
rs60413189	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60514372	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60656886	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60696976	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61224245	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61507597	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61574028	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62520242	0.88[EUR][1000 genomes]
rs62520243	0.88[EUR][1000 genomes]
rs62520244	0.88[EUR][1000 genomes]
rs62520245	0.88[EUR][1000 genomes]
rs62520660	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62520665	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62520666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520689	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62520697	1.00[ASN][1000 genomes]
rs62520699	1.00[ASN][1000 genomes]
rs62520700	1.00[ASN][1000 genomes]
rs62520701	1.00[ASN][1000 genomes]
rs62520728	1.00[ASN][1000 genomes]
rs62520731	1.00[ASN][1000 genomes]
rs62522360	0.88[EUR][1000 genomes]
rs62522361	0.88[EUR][1000 genomes]
rs62522362	0.88[EUR][1000 genomes]
rs62522363	0.88[EUR][1000 genomes]
rs62522364	0.88[EUR][1000 genomes]
rs62522365	0.88[EUR][1000 genomes]
rs62522366	0.88[EUR][1000 genomes]
rs62522367	0.88[EUR][1000 genomes]
rs62522368	0.88[EUR][1000 genomes]
rs62522369	0.88[EUR][1000 genomes]
rs62522370	0.88[EUR][1000 genomes]
rs62522371	0.88[EUR][1000 genomes]
rs62522372	0.88[EUR][1000 genomes]
rs62522373	0.88[EUR][1000 genomes]
rs62522374	0.88[EUR][1000 genomes]
rs62522375	0.88[EUR][1000 genomes]
rs62522376	0.84[EUR][1000 genomes]
rs62522377	0.88[EUR][1000 genomes]
rs62522378	0.88[EUR][1000 genomes]
rs62522379	0.88[EUR][1000 genomes]
rs62522380	0.88[EUR][1000 genomes]
rs62522381	0.88[EUR][1000 genomes]
rs62522382	0.88[EUR][1000 genomes]
rs62522385	0.88[EUR][1000 genomes]
rs62522386	0.88[EUR][1000 genomes]
rs62522387	0.88[EUR][1000 genomes]
rs62522388	0.88[EUR][1000 genomes]
rs62522389	0.88[EUR][1000 genomes]
rs62522391	0.88[EUR][1000 genomes]
rs62526894	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526895	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526896	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526904	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526905	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526906	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526907	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526912	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526913	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526914	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526915	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526916	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526917	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526918	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526919	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62526920	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62528241	0.85[AMR][1000 genomes]
rs62528253	0.88[EUR][1000 genomes]
rs62528254	0.84[EUR][1000 genomes]
rs62530188	0.88[EUR][1000 genomes]
rs62530189	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530190	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530191	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530192	0.84[EUR][1000 genomes]
rs62530193	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530194	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530195	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530197	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530198	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530200	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530202	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530204	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530205	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530206	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530208	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530209	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530210	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530211	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530212	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530213	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530214	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530215	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530216	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530217	0.88[EUR][1000 genomes]
rs62530218	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530219	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530221	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530222	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530223	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530224	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530225	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530226	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530227	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530228	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530229	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530230	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6983282	0.88[EUR][1000 genomes]
rs6985976	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6986809	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6996359	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6996649	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7000389	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7001049	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7002442	0.88[EUR][1000 genomes]
rs7002584	0.88[EUR][1000 genomes]
rs7002594	0.88[EUR][1000 genomes]
rs7016834	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7016989	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7017275	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73317991	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73317997	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73317999	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73318001	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73319721	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73319750	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73319762	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73319766	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73319779	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73319780	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73319784	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73319803	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73321623	0.88[EUR][1000 genomes]
rs73321626	0.88[EUR][1000 genomes]
rs73321691	0.88[EUR][1000 genomes]
rs73321692	0.88[EUR][1000 genomes]
rs73321698	0.88[EUR][1000 genomes]
rs73321700	0.88[EUR][1000 genomes]
rs73323309	0.88[EUR][1000 genomes]
rs73323337	0.88[EUR][1000 genomes]
rs7819504	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7819559	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7819843	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7837510	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7837807	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7837963	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7843626	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs923430	0.88[EUR][1000 genomes]
rs923431	0.88[EUR][1000 genomes]
rs923432	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111927400-111930600	Weak transcription	HUVEC	blood vessel
2	chr8:111929600-111942400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:111930200-111931000	Enhancers	Primary hematopoietic stem cells	blood

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