Variant report

Variant	rs62530192
Chromosome Location	chr8:111803537-111803538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 192 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs10505152	1.00[ASN][1000 genomes]
rs10505153	1.00[ASN][1000 genomes]
rs10955544	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387411	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602039	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602040	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602041	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602043	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602044	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602045	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881088	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881101	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881112	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881121	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881123	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881124	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881145	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881150	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2130186	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171708	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220482	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351324	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351326	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2882627	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634614	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56966024	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56992800	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57005858	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57496484	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58499839	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58685030	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58874649	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59243778	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60413189	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60514372	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60656886	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60696976	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61224245	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61507597	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61574028	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520241	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520242	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520243	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520244	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520245	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520660	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62520665	0.80[EUR][1000 genomes]
rs62520666	0.84[EUR][1000 genomes]
rs62520688	0.84[EUR][1000 genomes]
rs62522360	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522361	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522362	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522363	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522364	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522365	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522366	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522367	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522368	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522369	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522370	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522371	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522372	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522373	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522374	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522375	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522376	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522377	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522378	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522379	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522380	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522381	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522382	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522385	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522386	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522387	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522388	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522389	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522391	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526894	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526895	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526896	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526904	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526905	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526906	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526907	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526912	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526913	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526914	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526915	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526916	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526917	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526918	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526919	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526920	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528253	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528254	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530188	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530189	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530190	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530191	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530193	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530194	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530195	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530197	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530198	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530199	1.00[ASN][1000 genomes]
rs62530200	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530201	0.84[EUR][1000 genomes]
rs62530202	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530204	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530205	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530206	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530208	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530209	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530210	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530211	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530212	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530213	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530214	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530215	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530216	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530217	0.96[EUR][1000 genomes]
rs62530218	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530219	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530221	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530222	0.96[EUR][1000 genomes]
rs62530223	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530224	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530225	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530226	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530227	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530228	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530229	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62530230	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983282	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985976	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986809	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996359	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996649	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000389	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001049	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002442	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002576	0.84[EUR][1000 genomes]
rs7002584	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002594	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007326	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016394	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016834	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016989	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017275	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317991	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317997	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73317999	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318001	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319721	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319750	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319762	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319766	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319779	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319780	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319784	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319803	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321623	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321626	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321691	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321692	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321698	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321700	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323309	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323337	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819504	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819559	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819843	0.92[EUR][1000 genomes]
rs7837510	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837807	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837963	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843429	1.00[ASN][1000 genomes]
rs7843626	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923430	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923431	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs923432	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025390	chr8:111605571-111806020	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539718	chr8:111605571-111806020	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891293	chr8:111704563-111822043	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv1031245	chr8:111716585-111875753	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv3446819	chr8:111792825-111817060	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv968538	chr8:111793793-111813462	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111788600-111826200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:111803200-111804000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:111803200-111804400	Enhancers	Fetal Intestine Large	intestine
4	chr8:111803400-111804200	Enhancers	Fetal Intestine Small	intestine

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