Variant report

Variant	rs62522657
Chromosome Location	chr8:96258241-96258242
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96256620..96258806-chr8:96280344..96282393,2	MCF-7	breast:
2	chr8:96206515..96208115-chr8:96256638..96258375,2	MCF-7	breast:
3	chr8:96145784..96147714-chr8:96256412..96258560,3	MCF-7	breast:
4	chr8:96249492..96251130-chr8:96256592..96259030,2	K562	blood:
5	chr8:96047716..96050435-chr8:96257562..96260562,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1441397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16917426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55739300	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56306366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62522655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62522656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62522658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62524389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62524398	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62524402	0.91[EUR][1000 genomes]
rs62524408	0.91[EUR][1000 genomes]
rs7005341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72664698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6315	chr8:96216465-96261671	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv525440	chr8:96254346-96276292	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245200-96269200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
5	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
6	chr8:96248400-96262200	Weak transcription	HepG2	liver
7	chr8:96249000-96280800	Weak transcription	Gastric	stomach
8	chr8:96249600-96271400	Weak transcription	Aorta	Aorta
9	chr8:96250400-96261800	Weak transcription	Spleen	Spleen
10	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
11	chr8:96251000-96271000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
13	chr8:96251400-96259800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:96251400-96260200	Weak transcription	Primary B cells from cord blood	blood
15	chr8:96251800-96258800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:96252200-96263400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:96253400-96280400	Weak transcription	Esophagus	oesophagus
18	chr8:96254400-96261600	Weak transcription	Fetal Thymus	thymus
19	chr8:96254800-96259200	Weak transcription	HSMMtube	muscle
20	chr8:96255000-96263400	Weak transcription	Brain Anterior Caudate	brain
21	chr8:96255200-96268600	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:96255200-96280400	Weak transcription	Fetal Brain Male	brain
23	chr8:96255400-96258600	Weak transcription	Fetal Lung	lung
24	chr8:96256400-96263600	Weak transcription	Primary T cells from cord blood	blood
25	chr8:96256600-96258600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:96256800-96280400	Weak transcription	Lung	lung
27	chr8:96257000-96271400	Weak transcription	A549	lung
28	chr8:96257000-96280400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:96257400-96271000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:96257400-96271400	Weak transcription	Ovary	ovary
31	chr8:96257400-96280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:96257600-96259200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:96257600-96263600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr8:96257800-96265400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:96257800-96280400	Weak transcription	Fetal Kidney	kidney
36	chr8:96258000-96270800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:96258000-96280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:96258200-96280400	Weak transcription	Colon Smooth Muscle	Colon

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