Variant report

Variant	rs1441397
Chromosome Location	chr8:96267756-96267757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96266342..96268440-chr8:96282035..96284401,2	K562	blood:
2	chr8:96079167..96081297-chr8:96267070..96269403,2	MCF-7	breast:
3	chr8:96267545..96271748-chr8:96279577..96283221,5	MCF-7	breast:
4	chr8:96267529..96269819-chr8:96274003..96276020,2	MCF-7	breast:
5	chr8:96166229..96168914-chr8:96267692..96269921,2	K562	blood:
6	chr8:96263544..96265203-chr8:96266424..96268396,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253773	Chromatin interaction
ENSG00000156172	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1027267	1.00[ASN][1000 genomes]
rs16917426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34383415	1.00[ASN][1000 genomes]
rs55739300	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56306366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522655	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62522658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522861	1.00[ASN][1000 genomes]
rs62524389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524398	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524402	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524408	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72664698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525440	chr8:96254346-96276292	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96242200-96280600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:96243800-96280400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:96245200-96269200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:96245600-96280400	Weak transcription	Fetal Stomach	stomach
5	chr8:96245600-96280400	Weak transcription	Pancreas	Pancrea
6	chr8:96249000-96280800	Weak transcription	Gastric	stomach
7	chr8:96249600-96271400	Weak transcription	Aorta	Aorta
8	chr8:96250600-96280400	Weak transcription	Left Ventricle	heart
9	chr8:96251000-96271000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:96251200-96280400	Weak transcription	Psoas Muscle	Psoas
11	chr8:96253400-96280400	Weak transcription	Esophagus	oesophagus
12	chr8:96255200-96268600	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:96255200-96280400	Weak transcription	Fetal Brain Male	brain
14	chr8:96256800-96280400	Weak transcription	Lung	lung
15	chr8:96257000-96271400	Weak transcription	A549	lung
16	chr8:96257000-96280400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:96257400-96271000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr8:96257400-96271400	Weak transcription	Ovary	ovary
19	chr8:96257400-96280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:96257800-96280400	Weak transcription	Fetal Kidney	kidney
21	chr8:96258000-96270800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:96258000-96280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:96258200-96280400	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:96258400-96280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:96258800-96271400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:96260000-96280400	Weak transcription	Fetal Lung	lung
27	chr8:96260400-96280400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr8:96260800-96280400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr8:96261000-96280400	Weak transcription	Fetal Heart	heart
30	chr8:96261200-96280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr8:96261400-96280000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:96261800-96280400	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:96262000-96280400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr8:96262200-96280400	Weak transcription	Adipose Nuclei	Adipose
35	chr8:96262200-96280400	Weak transcription	Fetal Thymus	thymus
36	chr8:96262400-96271000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr8:96262600-96280400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:96262800-96271400	Weak transcription	Fetal Brain Female	brain
39	chr8:96263200-96280400	Weak transcription	Placenta	Placenta
40	chr8:96264200-96270600	Weak transcription	Brain Anterior Caudate	brain
41	chr8:96264200-96271000	Weak transcription	Primary B cells from cord blood	blood
42	chr8:96264200-96271400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:96264200-96276800	Weak transcription	Primary T cells from cord blood	blood
44	chr8:96264200-96280400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:96264200-96280400	Weak transcription	Liver	Liver
46	chr8:96264200-96280400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr8:96264200-96280400	Weak transcription	Brain Substantia Nigra	brain
48	chr8:96264400-96280000	Weak transcription	Brain Angular Gyrus	brain
49	chr8:96266000-96280400	Weak transcription	Fetal Intestine Small	intestine
50	chr8:96266600-96268400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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