Variant report

Variant	rs62522861
Chromosome Location	chr8:96375092-96375093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1027267	1.00[ASN][1000 genomes]
rs1441397	1.00[ASN][1000 genomes]
rs16917426	1.00[ASN][1000 genomes]
rs17747331	1.00[ASN][1000 genomes]
rs34383415	1.00[ASN][1000 genomes]
rs55739300	1.00[ASN][1000 genomes]
rs56306366	1.00[ASN][1000 genomes]
rs62522655	1.00[ASN][1000 genomes]
rs62522656	1.00[ASN][1000 genomes]
rs62522658	1.00[ASN][1000 genomes]
rs62524389	1.00[ASN][1000 genomes]
rs62524398	1.00[ASN][1000 genomes]
rs62524402	1.00[ASN][1000 genomes]
rs62524408	1.00[ASN][1000 genomes]
rs6471540	1.00[ASN][1000 genomes]
rs7005341	1.00[ASN][1000 genomes]
rs72664698	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429930	chr8:96317910-96454743	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1026549	chr8:96367183-96573134	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539681	chr8:96367183-96573134	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62522861	C8orf37	cis	brain	BrainEAC

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96366400-96377000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:96374600-96375600	Enhancers	GM12878-XiMat	blood
3	chr8:96374800-96376800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:96375000-96377200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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