Variant report

Variant	rs62523307
Chromosome Location	chr8:103641380-103641381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103638730..103642072-chr8:103644705..103647673,4	MCF-7	breast:
2	chr8:103597183..103598064-chr8:103640833..103641509,2	MCF-7	breast:
3	chr8:103635452..103642989-chr8:103815632..103824530,15	MCF-7	breast:
4	chr8:103640384..103642627-chr8:103667013..103669617,2	K562	blood:
5	chr8:103639826..103643166-chr8:103658941..103661983,3	K562	blood:
6	chr8:103589874..103592222-chr8:103638978..103641450,2	K562	blood:
7	chr8:103602402..103604318-chr8:103640333..103643151,2	K562	blood:
8	chr8:103640822..103642604-chr8:103804689..103806588,2	MCF-7	breast:
9	chr8:103640597..103642140-chr8:103817806..103819338,2	K562	blood:
10	chr8:103627845..103629493-chr8:103639298..103641445,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs62523296	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62523308	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523313	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72685125	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
3	chr8:103637200-103642400	Enhancers	Placenta	Placenta
4	chr8:103638000-103641400	Enhancers	HepG2	liver
5	chr8:103639000-103641400	Enhancers	K562	blood
6	chr8:103639600-103641600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr8:103639800-103641600	Enhancers	Duodenum Mucosa	Duodenum
8	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:103640200-103641600	Enhancers	Fetal Intestine Large	intestine
10	chr8:103640200-103641600	Enhancers	Fetal Intestine Small	intestine
11	chr8:103640200-103645200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:103640400-103641400	Enhancers	Stomach Mucosa	stomach
13	chr8:103640400-103641400	Enhancers	Hela-S3	cervix
14	chr8:103640400-103642200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr8:103640400-103642400	Enhancers	Fetal Heart	heart
16	chr8:103640600-103644600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:103640600-103646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:103640800-103642000	Weak transcription	Right Ventricle	heart
19	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
20	chr8:103641200-103641600	Enhancers	Colonic Mucosa	Colon
21	chr8:103641200-103642000	Weak transcription	Left Ventricle	heart
22	chr8:103641200-103642200	Enhancers	Liver	Liver
23	chr8:103641200-103644400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr8:103641200-103644600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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