Variant report

Variant	rs62523308
Chromosome Location	chr8:103645733-103645734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62523307	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523313	1.00[AMR][1000 genomes]
rs72685125	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62523308	SLC25A32,DCAF13,LOC100131102,LOC257152	cis	temporal cortex	BrainEAC

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
3	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:103640600-103646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
6	chr8:103644600-103647000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:103644800-103650000	Enhancers	Placenta	Placenta
8	chr8:103644800-103659600	Weak transcription	Spleen	Spleen
9	chr8:103645000-103646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:103645000-103646600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:103645000-103647800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:103645200-103646000	Enhancers	Hela-S3	cervix
13	chr8:103645200-103646200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:103645200-103646400	Weak transcription	K562	blood
15	chr8:103645200-103646600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:103645600-103660000	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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