Variant report

Variant	rs62524820
Chromosome Location	chr8:103520539-103520540
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103514926..103517278-chr8:103519523..103523962,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240724	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12056666	0.80[ASN][1000 genomes]
rs12114119	0.85[EUR][1000 genomes]
rs12114624	0.85[EUR][1000 genomes]
rs12114692	0.85[EUR][1000 genomes]
rs12114776	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12114928	0.85[EUR][1000 genomes]
rs12681900	0.87[ASN][1000 genomes]
rs16869476	0.89[AFR][1000 genomes]
rs16869480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869485	0.82[ASN][1000 genomes]
rs2002177	0.83[EUR][1000 genomes]
rs2217750	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436971	0.86[ASN][1000 genomes]
rs28439349	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28521035	0.86[EUR][1000 genomes]
rs4317537	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734058	0.91[ASN][1000 genomes]
rs4734631	0.85[ASN][1000 genomes]
rs60137499	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62524798	0.85[EUR][1000 genomes]
rs62524800	0.87[EUR][1000 genomes]
rs62524801	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62524802	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62524803	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62524812	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62524813	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62524815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524816	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62524823	0.82[ASN][1000 genomes]
rs62524824	0.82[ASN][1000 genomes]
rs62524825	0.82[ASN][1000 genomes]
rs62524826	0.82[ASN][1000 genomes]
rs6468833	0.85[ASN][1000 genomes]
rs6983384	0.90[ASN][1000 genomes]
rs7005430	0.83[EUR][1000 genomes]
rs7820694	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7820920	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7838902	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs872901	0.85[EUR][1000 genomes]
rs9642978	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
4	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1831575	chr8:103498317-103585093	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1838972	chr8:103498317-103585093	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1024876	chr8:103512785-103576658	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103502800-103529800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103517800-103520600	Weak transcription	HepG2	liver
3	chr8:103518000-103520600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:103518000-103520600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:103518200-103529600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:103518200-103529600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:103518400-103529600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:103518400-103529600	Weak transcription	Right Atrium	heart

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