Variant report

Variant	rs62524825
Chromosome Location	chr8:103529672-103529673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103528321..103530383-chr8:103533029..103535139,2	K562	blood:
2	chr8:103522488..103525598-chr8:103527242..103531492,4	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12056666	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16869480	0.82[ASN][1000 genomes]
rs16869485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217750	0.85[ASN][1000 genomes]
rs4317537	0.82[ASN][1000 genomes]
rs4734058	0.89[ASN][1000 genomes]
rs4734629	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4734632	0.83[ASN][1000 genomes]
rs62524788	0.89[ASN][1000 genomes]
rs62524791	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62524815	0.82[ASN][1000 genomes]
rs62524816	0.82[ASN][1000 genomes]
rs62524817	0.81[ASN][1000 genomes]
rs62524820	0.82[ASN][1000 genomes]
rs62524823	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983384	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6983758	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9642978	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv1831575	chr8:103498317-103585093	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1838972	chr8:103498317-103585093	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1024876	chr8:103512785-103576658	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3419415	chr8:103525141-103575507	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103502800-103529800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103524400-103529800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:103524600-103529800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:103529400-103530800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:103529600-103529800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:103529600-103529800	Enhancers	Right Atrium	heart
7	chr8:103529600-103530000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:103529600-103530000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:103529600-103530000	Enhancers	Fetal Brain Male	brain
10	chr8:103529600-103530000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr8:103529600-103530200	Enhancers	Stomach Mucosa	stomach
12	chr8:103529600-103530400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:103529600-103530400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:103529600-103530400	Enhancers	Colonic Mucosa	Colon
15	chr8:103529600-103530600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:103529600-103530600	Enhancers	Fetal Intestine Large	intestine
17	chr8:103529600-103530600	Enhancers	Fetal Intestine Small	intestine
18	chr8:103529600-103530600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr8:103529600-103530800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr8:103529600-103530800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr8:103529600-103530800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr8:103529600-103531600	Enhancers	Duodenum Mucosa	Duodenum
23	chr8:103529600-103531600	Enhancers	HepG2	liver

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