Variant report

Variant	rs62525315
Chromosome Location	chr8:104071424-104071425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103878528..103880938-chr8:104070739..104073317,2	MCF-7	breast:
2	chr8:104070092..104072042-chr8:104074134..104075946,2	K562	blood:
3	chr8:104068104..104073340-chr8:104073499..104077893,7	MCF-7	breast:
4	chr8:103880199..103883793-chr8:104071140..104073626,3	K562	blood:

Variant related genes	Relation type
ENSG00000155097	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16869976	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16869978	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16870018	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16870033	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28372883	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3824225	0.96[EUR][1000 genomes]
rs3824228	0.92[EUR][1000 genomes]
rs60356223	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62525309	0.96[EUR][1000 genomes]
rs62525313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62525314	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62525329	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104034800-104074600	Weak transcription	NHEK	skin
2	chr8:104050400-104086000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr8:104050600-104089600	Weak transcription	Psoas Muscle	Psoas
4	chr8:104051600-104087400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:104052800-104082200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:104053200-104073000	Weak transcription	Colonic Mucosa	Colon
7	chr8:104053200-104085600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:104053600-104083800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:104054000-104084400	Strong transcription	Fetal Thymus	thymus
10	chr8:104054200-104083400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:104054200-104083800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:104054200-104084400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr8:104055200-104087000	Weak transcription	K562	blood
14	chr8:104056200-104077000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:104057000-104084200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:104058800-104071600	Strong transcription	HSMM	muscle
17	chr8:104058800-104073600	Strong transcription	Dnd41	blood
18	chr8:104058800-104083400	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr8:104059000-104072800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr8:104059000-104083600	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr8:104059200-104072000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:104059200-104083600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr8:104059400-104083400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:104059400-104083800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:104059400-104085200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:104059400-104085800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr8:104059600-104085400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:104059800-104083400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr8:104059800-104084000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr8:104060000-104083400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:104060000-104083600	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:104060000-104083800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr8:104060200-104083000	Weak transcription	Gastric	stomach
34	chr8:104060800-104079200	Strong transcription	Placenta	Placenta
35	chr8:104061600-104084000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr8:104062600-104081000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:104063200-104071600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:104063200-104071800	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr8:104063400-104083800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr8:104063800-104074800	Strong transcription	Fetal Lung	lung
41	chr8:104065000-104072400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr8:104065000-104085000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr8:104065400-104075200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:104065400-104085200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr8:104066000-104073200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr8:104066200-104075400	Strong transcription	Primary T cells from cord blood	blood
47	chr8:104066200-104075400	Strong transcription	GM12878-XiMat	blood
48	chr8:104066200-104076000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr8:104066600-104072400	Strong transcription	Ovary	ovary
50	chr8:104066600-104075000	Strong transcription	Fetal Muscle Leg	muscle

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