Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr8:104031862-104032159	HepG2	liver:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103873561..103877987-chr8:104030387..104035295,15	K562	blood:
2	chr8:103875552..103877856-chr8:104031071..104034645,4	K562	blood:
3	chr8:103874643..103878099-chr8:104031324..104040310,20	MCF-7	breast:
4	chr8:104026806..104029489-chr8:104031161..104032899,2	K562	blood:
5	chr8:104027811..104029796-chr8:104031590..104033402,2	MCF-7	breast:
6	chr8:104026806..104029489-chr8:104031161..104033140,3	K562	blood:
7	chr8:103870045..103872985-chr8:104031865..104034556,2	MCF-7	breast:
8	chr8:103873594..103879966-chr8:104029090..104036191,28	MCF-7	breast:
9	chr8:104024663..104026547-chr8:104030749..104032308,2	MCF-7	breast:
10	chr17:62222917..62224705-chr8:104031776..104034703,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16869976	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869978	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870018	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16870033	0.96[EUR][1000 genomes]
rs28372883	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3018948	0.87[ASN][1000 genomes]
rs3824225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824228	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486506	0.83[ASN][1000 genomes]
rs488420	0.83[ASN][1000 genomes]
rs60356223	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs613121	0.80[ASN][1000 genomes]
rs615348	0.80[ASN][1000 genomes]
rs62525313	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62525314	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62525315	0.96[EUR][1000 genomes]
rs62525329	0.92[EUR][1000 genomes]
rs628793	0.83[ASN][1000 genomes]
rs630236	0.83[ASN][1000 genomes]
rs631019	0.83[ASN][1000 genomes]
rs642994	0.81[ASN][1000 genomes]
rs644305	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104023200-104032000	Weak transcription	K562	blood
2	chr8:104023200-104032800	Weak transcription	Pancreas	Pancrea
3	chr8:104026600-104032000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:104031600-104032400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:104031800-104032800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

Quick Search: