Variant report

Variant	rs615348
Chromosome Location	chr8:104007996-104007997
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103996495..103999134-chr8:104007444..104009301,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16869976	0.80[ASN][1000 genomes]
rs16869978	0.80[ASN][1000 genomes]
rs2513873	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2513874	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2646307	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28372883	0.80[ASN][1000 genomes]
rs3018948	0.88[ASN][1000 genomes]
rs3824225	0.80[ASN][1000 genomes]
rs3824228	0.80[ASN][1000 genomes]
rs473142	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs473152	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs486506	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs488420	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs492701	0.98[ASN][1000 genomes]
rs613121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62525309	0.80[ASN][1000 genomes]
rs628793	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs630236	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs631019	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs642994	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs644305	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs677398	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs677415	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs681859	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:104001600-104008800	Weak transcription	Brain Substantia Nigra	brain
4	chr8:104001600-104011400	Weak transcription	Fetal Brain Male	brain
5	chr8:104003200-104008000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr8:104004000-104010200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:104006600-104008600	Strong transcription	Primary B cells from cord blood	blood
8	chr8:104006600-104009000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:104006600-104009200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:104006800-104009000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:104006800-104009200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:104006800-104012400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:104007000-104008200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
14	chr8:104007000-104008600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr8:104007000-104008600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr8:104007200-104008800	Enhancers	HSMM	muscle
17	chr8:104007200-104014400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr8:104007400-104008200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:104007400-104008800	Enhancers	HSMMtube	muscle
20	chr8:104007600-104008200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:104007600-104008600	Enhancers	NHLF	lung
22	chr8:104007600-104008600	Enhancers	Osteobl	bone
23	chr8:104007600-104009000	Enhancers	NHDF-Ad	bronchial
24	chr8:104007600-104010600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr8:104007600-104010600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:104007600-104011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:104007600-104011800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr8:104007600-104014200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:104007800-104008600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links