Variant report

Variant	rs473142
Chromosome Location	chr8:104004506-104004507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2513873	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2513874	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2646307	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3018948	0.82[ASN][1000 genomes]
rs473152	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486506	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs488420	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs492701	0.88[ASN][1000 genomes]
rs613121	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs615348	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs628793	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs630236	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs631019	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs642994	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs644305	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs677398	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs677415	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs681859	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:104000000-104007000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:104000200-104006800	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:104001000-104007000	Weak transcription	Brain Hippocampus Middle	brain
6	chr8:104001600-104008800	Weak transcription	Brain Substantia Nigra	brain
7	chr8:104001600-104011400	Weak transcription	Fetal Brain Male	brain
8	chr8:104003000-104004600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:104003000-104004600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr8:104003200-104008000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr8:104004000-104004600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:104004000-104010200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:104004200-104007400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:104004400-104005400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:104004400-104005800	Strong transcription	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links