Variant report

Variant	rs681859
Chromosome Location	chr8:103998626-103998627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103993083..103995018-chr8:103998506..104000574,2	MCF-7	breast:
2	chr8:103989692..103992041-chr8:103996933..103998764,2	MCF-7	breast:
3	chr8:103996495..103999134-chr8:104007444..104009301,2	MCF-7	breast:
4	chr8:103983197..103984715-chr8:103998535..104001425,2	K562	blood:

Variant related genes	Relation type
ENSG00000254281	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16870018	0.88[GIH][hapmap]
rs16870033	0.88[GIH][hapmap]
rs2513873	0.82[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2513874	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2646307	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3018948	0.86[ASN][1000 genomes]
rs3824225	0.90[CHD][hapmap];0.88[GIH][hapmap]
rs473142	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs473152	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs486506	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs488420	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs492701	1.00[ASN][1000 genomes]
rs613121	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs615348	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs628793	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs630236	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs631019	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs642994	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs644305	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs677398	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs677415	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv824699	chr8:103993689-103998885	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611831	chr8:103995624-104002664	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:103994800-103999200	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:103995800-103999400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:103996000-104001400	Weak transcription	Primary B cells from cord blood	blood
6	chr8:103996400-104001400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:103996400-104001800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:103996400-104003200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:103996400-104003200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:103998400-103999200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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