Variant report

Variant	rs2513874
Chromosome Location	chr8:104000065-104000066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2513873	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2646307	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018948	0.85[ASN][1000 genomes]
rs473142	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs473152	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs486506	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs488420	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs492701	0.99[ASN][1000 genomes]
rs613121	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs615348	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs628793	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs630236	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs631019	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs642994	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs644305	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs677398	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs677415	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs681859	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv611831	chr8:103995624-104002664	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
3	chr8:103996000-104001400	Weak transcription	Primary B cells from cord blood	blood
4	chr8:103996400-104001400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:103996400-104001800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:103996400-104003200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:103996400-104003200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:103999000-104003800	Weak transcription	Gastric	stomach
9	chr8:103999200-104001400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:103999200-104002600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:103999600-104001400	Weak transcription	Brain Substantia Nigra	brain
12	chr8:104000000-104000400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:104000000-104007000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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