Variant report

Variant	rs62527601
Chromosome Location	chr8:104143935-104143936
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104130679..104132364-chr8:104143004..104144519,2	MCF-7	breast:
2	chr8:104141446..104144347-chr8:104146017..104147840,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55912746	0.91[EUR][1000 genomes]
rs62527602	0.91[EUR][1000 genomes]
rs62527603	0.91[EUR][1000 genomes]
rs62527604	0.91[EUR][1000 genomes]
rs62527609	0.91[EUR][1000 genomes]
rs62527614	0.91[EUR][1000 genomes]
rs62527615	0.91[EUR][1000 genomes]
rs62527633	0.91[EUR][1000 genomes]
rs62527634	0.91[EUR][1000 genomes]
rs6994827	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104134400-104145000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:104142000-104145200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:104142800-104145600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:104142800-104146200	Enhancers	NHDF-Ad	bronchial
5	chr8:104143000-104144600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:104143000-104144800	Enhancers	Osteobl	bone
7	chr8:104143000-104145200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:104143000-104146200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:104143200-104144200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:104143200-104146800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:104143200-104147200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:104143200-104147200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:104143400-104145200	Enhancers	HSMM	muscle
14	chr8:104143600-104144800	Enhancers	Brain Hippocampus Middle	brain
15	chr8:104143600-104145000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:104143600-104145000	Enhancers	Brain Cingulate Gyrus	brain
17	chr8:104143600-104145400	Enhancers	NH-A	brain
18	chr8:104143600-104146000	Enhancers	Brain Angular Gyrus	brain
19	chr8:104143600-104147000	Enhancers	Brain Anterior Caudate	brain
20	chr8:104143600-104147200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:104143800-104144000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:104143800-104144000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:104143800-104144800	Weak transcription	Ovary	ovary
24	chr8:104143800-104145200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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