Variant report

Variant	rs62527602
Chromosome Location	chr8:104145561-104145562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:104145448..104147385-chr8:104217856..104220311,2	MCF-7	breast:
2	chr8:104144119..104147057-chr8:104147577..104149129,2	K562	blood:
3	chr8:104144818..104147441-chr8:104426048..104427977,2	K562	blood:
4	chr8:104114771..104116295-chr8:104145426..104148111,2	K562	blood:
5	chr8:104110222..104113167-chr8:104144712..104147363,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf56-4	chr8:104145191-104145597	NR_027071

No data

Variant related genes	Relation type
ENSG00000164933	Chromatin interaction
ENSG00000164934	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55912746	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527601	0.91[EUR][1000 genomes]
rs62527603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527633	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527634	1.00[EUR][1000 genomes]
rs6994827	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104142800-104145600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:104142800-104146200	Enhancers	NHDF-Ad	bronchial
3	chr8:104143000-104146200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:104143200-104146800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:104143200-104147200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:104143200-104147200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:104143600-104146000	Enhancers	Brain Angular Gyrus	brain
8	chr8:104143600-104147000	Enhancers	Brain Anterior Caudate	brain
9	chr8:104143600-104147200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:104144200-104146600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:104144200-104147200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:104144400-104146000	Enhancers	Fetal Stomach	stomach
13	chr8:104144400-104147000	Enhancers	Brain Substantia Nigra	brain
14	chr8:104144600-104145800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:104144800-104146000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:104144800-104146000	Enhancers	Ovary	ovary
17	chr8:104144800-104146600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:104145000-104145600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:104145000-104145800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:104145000-104146200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:104145000-104147200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:104145000-104149400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:104145200-104145600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr8:104145200-104145800	Enhancers	Brain Hippocampus Middle	brain
25	chr8:104145200-104145800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr8:104145200-104146000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:104145200-104146000	Enhancers	Fetal Muscle Trunk	muscle
28	chr8:104145200-104146600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr8:104145400-104145600	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr8:104145400-104145600	Enhancers	Osteobl	bone
31	chr8:104145400-104146800	Enhancers	Brain Germinal Matrix	brain
32	chr8:104145400-104147000	Enhancers	Brain Cingulate Gyrus	brain

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