Variant report

Variant	rs62528108
Chromosome Location	chr8:111333807-111333808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111327454..111329140-chr8:111333315..111334824,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10505144	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10955538	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1403841	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16880591	0.86[EUR][1000 genomes]
rs16880609	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880620	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16880622	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16880631	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16880637	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16880640	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16880647	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16880651	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16880653	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16880657	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2140474	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57281342	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57705832	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58378331	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58466321	0.94[ASN][1000 genomes]
rs61306671	0.86[ASN][1000 genomes]
rs62528098	0.86[ASN][1000 genomes]
rs62528101	0.86[ASN][1000 genomes]
rs62528102	0.86[ASN][1000 genomes]
rs62528105	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528106	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528109	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62528113	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62528115	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62528118	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62528119	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62528120	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62528121	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62528147	0.91[ASN][1000 genomes]
rs6469303	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6989508	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989966	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000311	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001118	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7011447	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825822	0.86[ASN][1000 genomes]
rs7826156	0.93[ASN][1000 genomes]
rs7836358	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842655	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026680	chr8:111131741-111413284	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv891286	chr8:111187061-111339379	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024499	chr8:111190482-111691474	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv539717	chr8:111190482-111691474	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1019708	chr8:111202215-111424058	Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv891288	chr8:111208985-111339379	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv891289	chr8:111218857-111339379	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv527414	chr8:111218857-111462136	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1032460	chr8:111218857-111470111	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1032389	chr8:111250159-111445816	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv891290	chr8:111280576-111377089	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111324200-111334000	Weak transcription	HMEC	breast
2	chr8:111326600-111334000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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