Variant report

Variant	rs6469303
Chromosome Location	chr8:111380551-111380552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10505144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10955538	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1403841	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880591	0.81[EUR][1000 genomes]
rs16880609	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16880620	0.96[ASN][1000 genomes]
rs16880622	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880631	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16880637	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16880640	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16880647	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880651	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880653	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880657	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2140474	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57281342	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57705832	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58378331	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58466321	0.98[ASN][1000 genomes]
rs62528105	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62528106	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62528108	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62528109	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62528113	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62528115	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62528118	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62528119	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62528120	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62528121	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62528147	0.98[ASN][1000 genomes]
rs6989508	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6989966	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7000311	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7001118	0.88[EUR][1000 genomes]
rs7011447	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7011644	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7826156	1.00[ASN][1000 genomes]
rs7836358	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026680	chr8:111131741-111413284	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024499	chr8:111190482-111691474	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539717	chr8:111190482-111691474	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1019708	chr8:111202215-111424058	Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv527414	chr8:111218857-111462136	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1032460	chr8:111218857-111470111	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1032389	chr8:111250159-111445816	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv611882	chr8:111342240-111722469	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1031119	chr8:111367939-111720763	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv396544	chr8:111380226-111381686	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111354800-111380600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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