Variant report

Variant	rs62531167
Chromosome Location	chr9:34553-34554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr9:34382-34845	GM12878	blood:	n/a	n/a
2	ZBTB33	chr9:34437-34724	GM12878	blood:	n/a	n/a
3	JUND	chr9:34066-35208	HepG2	liver:	n/a	n/a
4	HEY1	chr9:34244-35089	HepG2	liver:	n/a	n/a
5	TCF12	chr9:34411-34965	HepG2	liver:	n/a	n/a
6	RXRA	chr9:34262-35096	HepG2	liver:	n/a	n/a
7	SIN3AK20	chr9:34411-34886	HepG2	liver:	n/a	n/a
8	FOXA1	chr9:34109-35058	HepG2	liver:	n/a	n/a
9	GABPA	chr9:34418-34898	Hela-S3	cervix:	n/a	n/a
10	ZBTB33	chr9:34341-34834	GM12878	blood:	n/a	n/a
11	FOSL2	chr9:33769-35146	HepG2	liver:	n/a	n/a
12	SP1	chr9:34147-34607	GM12878	blood:	n/a	n/a
13	PAX5	chr9:33948-34953	GM12878	blood:	n/a	chr9:34167-34185
14	TAF1	chr9:34532-34827	Hela-S3	cervix:	n/a	n/a
15	NR2F2	chr9:33677-34934	K562	blood:	n/a	n/a
16	HEY1	chr9:34048-35145	K562	blood:	n/a	n/a
17	USF1	chr9:34385-34988	HepG2	liver:	n/a	chr9:34556-34567
18	POLR2A	chr9:34553-34857	U87	brain:	n/a	n/a
19	ZBTB33	chr9:33799-35045	HepG2	liver:	n/a	n/a
20	SPI1	chr9:34382-34841	K562	blood:	n/a	n/a
21	USF1	chr9:34062-35002	HepG2	liver:	n/a	chr9:34556-34567
22	HEY1	chr9:33983-35125	K562	blood:	n/a	n/a
23	ZBTB33	chr9:33724-34882	K562	blood:	n/a	n/a
24	PAX5	chr9:34425-34923	GM12878	blood:	n/a	n/a
25	SIX5	chr9:33725-35046	K562	blood:	n/a	n/a
26	JUND	chr9:34467-34911	HepG2	liver:	n/a	n/a
27	E2F6	chr9:34498-34595	K562	blood:	n/a	n/a
28	GATA2	chr9:33620-37011	K562	blood:	n/a	chr9:36660-36670 chr9:36639-36648 chr9:36582-36591
29	POU2F2	chr9:33768-34958	GM12878	blood:	n/a	n/a
30	POLR2A	chr9:34361-34900	U87	brain:	n/a	n/a
31	SP1	chr9:34010-35550	HepG2	liver:	n/a	n/a
32	GABPA	chr9:33762-35094	Hela-S3	cervix:	n/a	n/a
33	MAX	chr9:34470-34625	K562	blood:	n/a	n/a
34	SPI1	chr9:34041-35019	K562	blood:	n/a	n/a
35	FOSL2	chr9:33830-35031	HepG2	liver:	n/a	n/a
36	SIX5	chr9:34110-35000	K562	blood:	n/a	n/a
37	POLR2A	chr9:34170-35026	Hela-S3	cervix:	n/a	n/a
38	ZBTB33	chr9:33677-35112	K562	blood:	n/a	n/a
39	POLR2A	chr9:33987-35030	H1-hESC	embryonic stem cell:	n/a	n/a
40	CBX3	chr9:33813-35036	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM138C-2	chr9:34394-34957	NONHSAT129883
2	lnc-FAM138C-2	chr9:34394-34957	ENSG00000218839.3

Variant related genes	Relation type
ENSG00000181404	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8400	chr9:10001-51412	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv891939	chr9:10001-129899	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	esv19929	chr9:10485-48531	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949672	chr9:13091-274606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv3347609	chr9:28452-36550	Active TSS Weak transcription Enhancers	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	esv3366630	chr9:28452-36550	Active TSS Enhancers Weak transcription	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3353764	chr9:28452-37550	Active TSS Weak transcription Enhancers	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
10	nsv482863	chr9:31933-129899	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv427835	chr9:31994-235675	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv2758174	chr9:31994-383816	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	esv2759654	chr9:31994-383816	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv968757	chr9:32355-47190	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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