Variant report

Variant	rs62532795
Chromosome Location	chr9:14354529-14354530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:14351764..14354582-chr9:14354595..14356619,2	MCF-7	breast:
2	chr9:14312742..14317142-chr9:14351600..14355327,7	MCF-7	breast:
3	chr9:14312756..14315327-chr9:14353446..14357792,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction
ENSG00000225472	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57582029	1.00[ASN][1000 genomes]
rs62532793	1.00[ASN][1000 genomes]
rs62532794	1.00[ASN][1000 genomes]
rs62532797	1.00[ASN][1000 genomes]
rs62532798	1.00[ASN][1000 genomes]
rs62532821	1.00[ASN][1000 genomes]
rs877569	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv526315	chr9:14347811-14362390	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14348800-14356000	Weak transcription	Gastric	stomach
2	chr9:14353000-14354600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:14353000-14355000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:14353600-14354600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:14353600-14355400	Enhancers	Fetal Lung	lung
6	chr9:14353600-14356400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:14353600-14356400	Weak transcription	Right Ventricle	heart
8	chr9:14353600-14362600	Weak transcription	Psoas Muscle	Psoas
9	chr9:14353600-14371800	Weak transcription	Left Ventricle	heart
10	chr9:14353800-14361400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:14354000-14354600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr9:14354000-14354600	Enhancers	Colon Smooth Muscle	Colon
13	chr9:14354000-14354800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:14354000-14354800	Weak transcription	Aorta	Aorta
15	chr9:14354000-14355000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:14354000-14355200	Enhancers	Fetal Muscle Leg	muscle
17	chr9:14354000-14355400	Enhancers	Brain Cingulate Gyrus	brain
18	chr9:14354000-14355400	Enhancers	Brain Substantia Nigra	brain
19	chr9:14354000-14355600	Enhancers	Fetal Brain Male	brain
20	chr9:14354000-14356400	Weak transcription	Brain Angular Gyrus	brain
21	chr9:14354000-14356400	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:14354000-14356400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr9:14354000-14356400	Weak transcription	Right Atrium	heart
24	chr9:14354000-14361400	Weak transcription	Fetal Stomach	stomach
25	chr9:14354000-14365200	Weak transcription	HUVEC	blood vessel
26	chr9:14354200-14354600	Weak transcription	Fetal Heart	heart
27	chr9:14354200-14354600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:14354200-14355200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr9:14354200-14355600	Enhancers	Brain Germinal Matrix	brain
30	chr9:14354200-14356200	Weak transcription	Adipose Nuclei	Adipose
31	chr9:14354200-14356200	Weak transcription	Brain Anterior Caudate	brain
32	chr9:14354200-14361200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:14354200-14365600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr9:14354400-14355200	Enhancers	Fetal Brain Female	brain

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