Variant report

Variant	rs62532821
Chromosome Location	chr9:14364250-14364251
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57582029	1.00[ASN][1000 genomes]
rs62532793	1.00[ASN][1000 genomes]
rs62532794	1.00[ASN][1000 genomes]
rs62532795	1.00[ASN][1000 genomes]
rs62532797	1.00[ASN][1000 genomes]
rs62532798	1.00[ASN][1000 genomes]
rs877569	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14353600-14371800	Weak transcription	Left Ventricle	heart
2	chr9:14354000-14365200	Weak transcription	HUVEC	blood vessel
3	chr9:14354200-14365600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:14355400-14365800	Weak transcription	Brain Substantia Nigra	brain
5	chr9:14356800-14365400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:14357200-14372600	Weak transcription	Fetal Heart	heart
7	chr9:14359800-14365200	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:14359800-14366400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:14360400-14365400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:14361400-14367200	Enhancers	Colon Smooth Muscle	Colon
11	chr9:14361800-14365200	Weak transcription	HSMM	muscle
12	chr9:14361800-14365800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:14362200-14365200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:14362200-14365600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:14362200-14372600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:14362600-14365600	Weak transcription	Fetal Lung	lung
17	chr9:14362800-14365200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:14362800-14365200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:14362800-14365200	Weak transcription	NHLF	lung
20	chr9:14362800-14365400	Weak transcription	Aorta	Aorta
21	chr9:14362800-14365800	Weak transcription	Right Atrium	heart
22	chr9:14363000-14364800	Weak transcription	NHDF-Ad	bronchial
23	chr9:14363000-14365000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:14363000-14365000	Weak transcription	Osteobl	bone
25	chr9:14363400-14365600	Weak transcription	Fetal Stomach	stomach
26	chr9:14363400-14365800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:14363400-14365800	Weak transcription	Psoas Muscle	Psoas
28	chr9:14363400-14365800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:14363400-14366000	Weak transcription	Adipose Nuclei	Adipose
30	chr9:14363400-14366000	Weak transcription	Right Ventricle	heart
31	chr9:14364200-14364400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:14364200-14365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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