Variant report

Variant	rs62532872
Chromosome Location	chr9:13226669-13226670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17273542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62532652	1.00[AMR][1000 genomes]
rs62532869	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13145400-13228600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:13164200-13248600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:13164200-13258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:13182200-13226800	Weak transcription	Fetal Brain Male	brain
5	chr9:13189000-13268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:13190400-13237800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:13202800-13250600	Weak transcription	Pancreas	Pancrea
8	chr9:13202800-13250800	Weak transcription	Psoas Muscle	Psoas
9	chr9:13203000-13261000	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:13203400-13247000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:13203600-13245600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:13204000-13241800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:13204000-13249200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:13204200-13244600	Weak transcription	HepG2	liver
15	chr9:13206000-13229200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:13206000-13247000	Weak transcription	Brain Angular Gyrus	brain
17	chr9:13207600-13228200	Weak transcription	Esophagus	oesophagus
18	chr9:13208200-13265000	Weak transcription	Aorta	Aorta
19	chr9:13209800-13266000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:13214400-13227600	Weak transcription	Fetal Kidney	kidney
21	chr9:13215800-13233200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:13216600-13247000	Weak transcription	Fetal Brain Female	brain
23	chr9:13217000-13244200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:13218200-13231800	Weak transcription	NH-A	brain
25	chr9:13219600-13232800	Weak transcription	NHDF-Ad	bronchial
26	chr9:13219800-13265600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:13221600-13241600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:13221600-13244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:13221600-13245400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:13221800-13242800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:13221800-13246600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:13222200-13229400	Strong transcription	HSMMtube	muscle
33	chr9:13222400-13227400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:13222400-13229600	Weak transcription	HUVEC	blood vessel
35	chr9:13222600-13238000	Weak transcription	Adipose Nuclei	Adipose
36	chr9:13222600-13246200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:13223800-13239600	Weak transcription	HSMM	muscle
38	chr9:13224000-13241400	Weak transcription	Ovary	ovary
39	chr9:13224000-13242200	Weak transcription	Fetal Stomach	stomach
40	chr9:13224000-13264600	Weak transcription	Osteobl	bone
41	chr9:13224200-13241800	Weak transcription	Fetal Muscle Leg	muscle
42	chr9:13224200-13245600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:13224400-13229200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr9:13224400-13242600	Weak transcription	Fetal Lung	lung
45	chr9:13224400-13252400	Weak transcription	Liver	Liver
46	chr9:13224600-13227200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:13224600-13231200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:13224600-13241800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr9:13224600-13242400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr9:13224600-13247000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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