Variant report

Variant	rs62542751
Chromosome Location	chr9:27124431-27124432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:27114695..27116230-chr9:27123425..27125646,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10967734	0.83[ASN][1000 genomes]
rs11788136	0.83[ASN][1000 genomes]
rs12005388	0.83[ASN][1000 genomes]
rs12336187	0.83[ASN][1000 genomes]
rs12337860	0.83[ASN][1000 genomes]
rs12339162	0.83[ASN][1000 genomes]
rs12340500	0.83[ASN][1000 genomes]
rs12343345	0.83[ASN][1000 genomes]
rs12350053	0.83[ASN][1000 genomes]
rs12350086	0.83[ASN][1000 genomes]
rs12352603	0.83[ASN][1000 genomes]
rs12352631	0.83[ASN][1000 genomes]
rs12551926	0.83[ASN][1000 genomes]
rs13293051	0.83[ASN][1000 genomes]
rs16911083	0.83[ASN][1000 genomes]
rs17694796	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17756599	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17756667	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17756685	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2027124	0.83[ASN][1000 genomes]
rs36090003	0.83[ASN][1000 genomes]
rs62542752	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62542753	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62542755	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62542757	0.83[ASN][1000 genomes]
rs62542758	0.83[ASN][1000 genomes]
rs62544592	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62544593	0.83[ASN][1000 genomes]
rs62544597	0.83[ASN][1000 genomes]
rs62544598	0.83[ASN][1000 genomes]
rs62544599	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62544600	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62544601	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62544603	0.80[AFR][1000 genomes]
rs6475959	0.83[ASN][1000 genomes]
rs6475960	0.83[ASN][1000 genomes]
rs6475963	0.83[ASN][1000 genomes]
rs6475964	0.83[ASN][1000 genomes]
rs6475966	0.83[ASN][1000 genomes]
rs6475968	0.83[ASN][1000 genomes]
rs66704846	0.83[ASN][1000 genomes]
rs66779473	0.83[ASN][1000 genomes]
rs67294931	0.83[ASN][1000 genomes]
rs67322240	0.83[ASN][1000 genomes]
rs67667821	0.83[ASN][1000 genomes]
rs7023335	0.83[ASN][1000 genomes]
rs7023443	0.83[ASN][1000 genomes]
rs7024233	0.83[ASN][1000 genomes]
rs7037509	0.83[ASN][1000 genomes]
rs7040772	0.83[ASN][1000 genomes]
rs7042003	0.83[ASN][1000 genomes]
rs7042119	0.83[ASN][1000 genomes]
rs7043905	0.83[ASN][1000 genomes]
rs7044842	0.83[ASN][1000 genomes]
rs71510418	0.83[ASN][1000 genomes]
rs7847161	0.83[ASN][1000 genomes]
rs7847280	0.83[ASN][1000 genomes]
rs7862757	0.83[ASN][1000 genomes]
rs7873019	0.83[ASN][1000 genomes]
rs7873161	0.83[ASN][1000 genomes]
rs7873329	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv613945	chr9:27121906-27148475	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27119000-27124600	Weak transcription	NHDF-Ad	bronchial
2	chr9:27119600-27124600	Weak transcription	Stomach Mucosa	stomach
3	chr9:27122800-27127200	Enhancers	Fetal Muscle Leg	muscle
4	chr9:27122800-27150800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:27123000-27124800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:27123000-27124800	Enhancers	NHEK	skin
7	chr9:27123000-27127200	Enhancers	Fetal Stomach	stomach
8	chr9:27123200-27126000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:27123200-27127000	Enhancers	Osteobl	bone
10	chr9:27123600-27124600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:27123600-27129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:27123800-27125200	Enhancers	Psoas Muscle	Psoas
13	chr9:27123800-27127400	Enhancers	Fetal Lung	lung
14	chr9:27124000-27125000	Enhancers	Placenta	Placenta
15	chr9:27124000-27125200	Enhancers	Fetal Muscle Trunk	muscle
16	chr9:27124000-27126200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:27124000-27126200	Enhancers	HUVEC	blood vessel
18	chr9:27124000-27126400	Enhancers	NH-A	brain
19	chr9:27124000-27127000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:27124000-27127000	Enhancers	NHLF	lung
21	chr9:27124200-27124600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:27124200-27125200	Enhancers	Left Ventricle	heart
23	chr9:27124200-27125200	Enhancers	Lung	lung
24	chr9:27124200-27125200	Enhancers	Spleen	Spleen
25	chr9:27124200-27125600	Enhancers	Adipose Nuclei	Adipose
26	chr9:27124200-27125800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:27124200-27126200	Enhancers	Hela-S3	cervix
28	chr9:27124200-27126400	Enhancers	HSMMtube	muscle
29	chr9:27124200-27126600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:27124200-27126600	Enhancers	HSMM	muscle
31	chr9:27124200-27126800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:27124200-27126800	Enhancers	HMEC	breast
33	chr9:27124200-27127000	Enhancers	Colon Smooth Muscle	Colon
34	chr9:27124400-27124600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr9:27124400-27124800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:27124400-27124800	Weak transcription	Esophagus	oesophagus
37	chr9:27124400-27125000	Enhancers	Fetal Kidney	kidney
38	chr9:27124400-27125200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:27124400-27125200	Enhancers	Brain Germinal Matrix	brain
40	chr9:27124400-27125200	Enhancers	Pancreas	Pancrea
41	chr9:27124400-27125200	Enhancers	Right Atrium	heart
42	chr9:27124400-27125800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:27124400-27126800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr9:27124400-27126800	Enhancers	A549	lung
45	chr9:27124400-27127000	Enhancers	Ovary	ovary
46	chr9:27124400-27127200	Enhancers	Rectal Smooth Muscle	rectum

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