Variant report

Variant	rs62542752
Chromosome Location	chr9:27126889-27126890
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10511803	0.80[EUR][1000 genomes]
rs10967734	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788136	1.00[ASN][1000 genomes]
rs12005388	1.00[ASN][1000 genomes]
rs12336187	1.00[ASN][1000 genomes]
rs12337860	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339162	1.00[ASN][1000 genomes]
rs12340500	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343345	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350053	1.00[ASN][1000 genomes]
rs12350086	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352474	0.80[EUR][1000 genomes]
rs12352603	1.00[ASN][1000 genomes]
rs12352631	1.00[ASN][1000 genomes]
rs12551926	0.88[ASN][1000 genomes]
rs12554485	0.94[ASN][1000 genomes]
rs13293051	1.00[ASN][1000 genomes]
rs16911083	1.00[ASN][1000 genomes]
rs17694796	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695026	0.81[AMR][1000 genomes]
rs17756599	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756667	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756685	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027124	1.00[ASN][1000 genomes]
rs36090003	1.00[ASN][1000 genomes]
rs4421433	0.81[EUR][1000 genomes]
rs62542751	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62542753	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542755	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542757	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62542758	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544592	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544593	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62544597	1.00[ASN][1000 genomes]
rs62544598	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544599	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544600	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544601	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544602	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62544603	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62544604	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6475959	1.00[ASN][1000 genomes]
rs6475960	1.00[ASN][1000 genomes]
rs6475962	0.89[ASN][1000 genomes]
rs6475963	1.00[ASN][1000 genomes]
rs6475964	1.00[ASN][1000 genomes]
rs6475966	1.00[ASN][1000 genomes]
rs6475968	1.00[ASN][1000 genomes]
rs66704846	1.00[ASN][1000 genomes]
rs66779473	1.00[ASN][1000 genomes]
rs67294931	1.00[ASN][1000 genomes]
rs67322240	1.00[ASN][1000 genomes]
rs67667821	1.00[ASN][1000 genomes]
rs7023335	1.00[ASN][1000 genomes]
rs7023443	1.00[ASN][1000 genomes]
rs7024233	1.00[ASN][1000 genomes]
rs7037509	1.00[ASN][1000 genomes]
rs7040772	1.00[ASN][1000 genomes]
rs7042003	1.00[ASN][1000 genomes]
rs7042119	1.00[ASN][1000 genomes]
rs7043905	1.00[ASN][1000 genomes]
rs7044842	1.00[ASN][1000 genomes]
rs71510418	1.00[ASN][1000 genomes]
rs7847161	0.88[ASN][1000 genomes]
rs7847280	0.88[ASN][1000 genomes]
rs7854048	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7862613	0.85[ASN][1000 genomes]
rs7862757	0.88[ASN][1000 genomes]
rs7871178	0.94[ASN][1000 genomes]
rs7873019	1.00[ASN][1000 genomes]
rs7873161	1.00[ASN][1000 genomes]
rs7873329	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv613945	chr9:27121906-27148475	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27122800-27127200	Enhancers	Fetal Muscle Leg	muscle
2	chr9:27122800-27150800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:27123000-27127200	Enhancers	Fetal Stomach	stomach
4	chr9:27123200-27127000	Enhancers	Osteobl	bone
5	chr9:27123600-27129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:27123800-27127400	Enhancers	Fetal Lung	lung
7	chr9:27124000-27127000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:27124000-27127000	Enhancers	NHLF	lung
9	chr9:27124200-27127000	Enhancers	Colon Smooth Muscle	Colon
10	chr9:27124400-27127000	Enhancers	Ovary	ovary
11	chr9:27124400-27127200	Enhancers	Rectal Smooth Muscle	rectum
12	chr9:27124600-27129000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:27125200-27127000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:27125200-27133200	Weak transcription	Psoas Muscle	Psoas
15	chr9:27125400-27129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:27125600-27129000	Weak transcription	Adipose Nuclei	Adipose
17	chr9:27126200-27127200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:27126200-27129000	Weak transcription	HUVEC	blood vessel
19	chr9:27126600-27129200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:27126800-27127000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr9:27126800-27127000	Enhancers	Skeletal Muscle Male	skeletal muscle

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