The 2.0 version of rSNPBase

Variant report

Variant rs625590
Chromosome Location chr1:47139675-47139676
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47134400-47140400 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:47134400-47145800 Weak transcription Hela-S3 cervix
3 chr1:47134400-47147800 Weak transcription Small Intestine intestine
4 chr1:47134600-47139800 Weak transcription NHLF lung
5 chr1:47134600-47140800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:47134600-47141200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr1:47134600-47141200 Weak transcription Aorta Aorta
8 chr1:47134600-47141200 Weak transcription HepG2 liver
9 chr1:47134600-47141400 Weak transcription NH-A brain
10 chr1:47134600-47142600 Weak transcription HSMMtube muscle
11 chr1:47134600-47142800 Weak transcription Ovary ovary
12 chr1:47134600-47143000 Weak transcription Muscle Satellite Cultured Cells --
13 chr1:47134600-47143200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:47134600-47145600 Weak transcription Fetal Kidney kidney
15 chr1:47134600-47145800 Weak transcription Fetal Brain Male brain
16 chr1:47134600-47147000 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr1:47134600-47147800 Weak transcription Psoas Muscle Psoas
18 chr1:47134600-47149200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr1:47134600-47153000 Weak transcription Right Atrium heart
20 chr1:47134600-47157200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:47134800-47141000 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr1:47134800-47141000 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:47134800-47141000 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr1:47134800-47141000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr1:47134800-47141000 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr1:47134800-47141000 Weak transcription Colon Smooth Muscle Colon
27 chr1:47134800-47141000 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:47134800-47141200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:47134800-47141200 Weak transcription Brain Substantia Nigra brain
30 chr1:47134800-47141200 Weak transcription Right Ventricle heart
31 chr1:47134800-47142800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr1:47134800-47142800 Weak transcription Fetal Lung lung
33 chr1:47134800-47143000 Weak transcription Rectal Smooth Muscle rectum
34 chr1:47134800-47143200 Weak transcription Brain Angular Gyrus brain
35 chr1:47134800-47152600 Weak transcription A549 lung
36 chr1:47135000-47141000 Weak transcription H1 Cell Line embryonic stem cell
37 chr1:47135000-47141000 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr1:47135000-47141400 Weak transcription H9 Cell Line embryonic stem cell
39 chr1:47135000-47142400 Weak transcription HMEC breast
40 chr1:47135000-47145400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:47135000-47145400 Weak transcription Esophagus oesophagus
42 chr1:47135400-47141000 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr1:47136000-47141000 Weak transcription HUES48 Cell Line embryonic stem cell
44 chr1:47138000-47152000 Strong transcription Stomach Smooth Muscle stomach
45 chr1:47138000-47157800 Strong transcription Fetal Adrenal Gland Adrenal Gland
46 chr1:47138200-47140000 Strong transcription Thymus Thymus
47 chr1:47138200-47140200 Genic enhancers K562 blood
48 chr1:47138200-47141000 Strong transcription Primary T cells from cord blood blood
49 chr1:47138200-47141000 Strong transcription Primary T regulatory cells fromperipheralblood blood
50 chr1:47138200-47141000 Strong transcription Lung lung

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Last update: Aug 31, 2015